PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00101

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 274aa MW: 31325 Da PI: 6.6371

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00101	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	8.6e-40	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l+++e+++am++++++++ara+dPv G++++i++lq q+e +++el+ + + AA26G00101 38 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLNPSEKDAAMHTIMFQSDARAKDPVGGCYRIIRELQYQIEYSRNELEIVLQ 136 7*********************************************************************************************99877 PP DUF260 100 e 100 + AA26G00101 137 Q 137 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.218	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-36	38	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MPSGKASVFP LHPKPSPPPL KPSSNIPRTG NSTSTNQACA ACKYQRRKCA PDCLLAPYFP 60 HDRHRQFLNA HKLFGVSNIT KIIKSLNPSE KDAAMHTIMF QSDARAKDPV GGCYRIIREL 120 QYQIEYSRNE LEIVLQQLAV FRDRAHHQEQ QQQQPHIQIQ EPEDISSFSS SCDPNNNSLP 180 FNYPLHLQEQ QHQQQQQQQY CSSGNFNGLQ EDMWCLQLQD SSTTVNMKGG FIDECEDVKP 240 VEEVSSERHD QFEHEGFVDQ RKLNMPSAQF IISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	31	138	4	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	31	138	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00101

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298101.1	1e-145	LOB domain-containing protein 22
Refseq	XP_023642605.1	1e-145	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-145	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	R0HMS1	1e-144	R0HMS1_9BRAS; Uncharacterized protein
TrEMBL	R0I3Y5	1e-144	R0I3Y5_9BRAS; Uncharacterized protein
STRING	XP_006298101.1	1e-145	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-126	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]