PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA26G00071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27089.3 Da PI: 7.5407 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+lv+ +k+ G g+W++ +++ g+ R++k+c++rw +yl AA26G00071 21 RGPWTVEEDEILVKFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 68 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 1e-15 | 75 | 119 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l AA26G00071 75 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 119 56699****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-22 | 12 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.139 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-29 | 17 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 21 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.087 | 69 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 72 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 76 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-11 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MRRNDEGKKT TPCCSRMGMK RGPWTVEEDE ILVKFIKKEG EGRWRSLPKR AGLLRCGKSC 60 RLRWMNYLRP SVKRGGITSD EEDLILRLHR LLGNRWSLIA GRIPGRTDNE IKNYWNTHLR 120 KKLLRQGIDP TTHKPLETTN TIEEVSNGQN SQHQHTKDNK ISTINNVFAN EEEQEQDDDV 180 FGFCYDETFS SFLNSFINDD DPFGNNVIAS SSKDYEQEDP MLVTSSSFGH DHRP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 21 | 123 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA26G00071 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500684.1 | 1e-112 | PREDICTED: transcription repressor MYB5 isoform X1 | ||||
Swissprot | Q38850 | 1e-109 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | D7L1F4 | 1e-110 | D7L1F4_ARALL; Uncharacterized protein | ||||
STRING | XP_010500684.1 | 1e-112 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-112 | myb domain protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|