PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00023

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 440aa MW: 48793.3 Da PI: 6.1555

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00023	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.4e-33	237	291	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl AA26G00023 237 KPRMRWTPELHEHFVEAVSKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 291 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.146	234	294	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-31	235	292	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-17	236	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	237	292	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-10	239	290	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	328	374	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MNRNSLVSTS PDECNKGVRE ACSSSLSPVH NFLNVQPETR SPFIRSQSPD SPGQLWPKSS 60 SQGTFSRSST FCTNLYLSSS SSSETQKHLG NTLPFLPNPN PSANNHSASA VDSARSPSTF 120 TEDLGNPFDG DSSGSLVKDY FNLSGDACSD AGFLDLNCQN DSFCLSEQME LQFLSDELEL 180 AITDRAETPR LEEIYETPLA SSNPVARSSP SQSWAAGTMS IEAVSSHLSP GSAANHKPRM 240 RWTPELHEHF VEAVSKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE 300 DKRNGSSEDK KPALSNSEAD EQKKGAVELT EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH 360 ARYLKKLLEE QCKTGRFISS SSSPQKLLSL CDSTPESQKE SKSKASSTKN KACEGDEDKC 420 EISPKRPRWE KKGDMEDPIR

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MNRNSLVSTS PDECNKGVRE ACSSSLSPVH NFLNVQPETR SPFIRSQSPD SPGQLWPKSS  60
SQGTFSRSST FCTNLYLSSS SSSETQKHLG NTLPFLPNPN PSANNHSASA VDSARSPSTF  120
TEDLGNPFDG DSSGSLVKDY FNLSGDACSD AGFLDLNCQN DSFCLSEQME LQFLSDELEL  180
AITDRAETPR LEEIYETPLA SSNPVARSSP SQSWAAGTMS IEAVSSHLSP GSAANHKPRM  240
RWTPELHEHF VEAVSKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE  300
DKRNGSSEDK KPALSNSEAD EQKKGAVELT EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH  360
ARYLKKLLEE QCKTGRFISS SSSPQKLLSL CDSTPESQKE SKSKASSTKN KACEGDEDKC  420
EISPKRPRWE KKGDMEDPIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-25	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00023

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499814.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499823.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499830.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499839.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_019101525.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	R0HYE1	0.0	R0HYE1_9BRAS; Uncharacterized protein
STRING	XP_010499814.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]