PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 357aa    MW: 41377 Da    PI: 8.6679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.21e-46281633128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 pGfrFhPtdeelv +yL +kv +k+     +++++ i+++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s +
  AA26G00012  28 PGFRFHPTDEELVGFYLSRKVFNKPkptnnINIHHLIHQIDIYKYDPWDLP-RWRNREKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDT 125
                 9***********************977777667668***************.6778999**************************************84 PP

         NAM  97 gel......vglkktLvfykgrapkgektdWvmheyrl 128
                 +++      +glkktLv+y g a kg+ktdW+mhe+rl
  AA26G00012 126 NSTgtaapvIGLKKTLVYYVGCAGKGNKTDWMMHEFRL 163
                 443566777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.5326200IPR003441NAC domain
SuperFamilySSF1019411.1E-4927200IPR003441NAC domain
PfamPF023651.3E-2428163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEENEMMGMG SSSEKRRRVE EEDVLGLPGF RFHPTDEELV GFYLSRKVFN KPKPTNNINI  60
HHLIHQIDIY KYDPWDLPRW RNREKESYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP  120
VYSDTNSTGT AAPVIGLKKT LVYYVGCAGK GNKTDWMMHE FRLPNSTNDD NNFFIHHHPP  180
PPASSSQDAE VWTLCRIFQR NVSNRNYSAE WRELAANKRI KPQQISSSTT TNTSINIGFY  240
QEAYISFGDI NETSRSSCST TANANATNIN MNMNMNMNNN VNVLDAKGNE RGVLLQRPHQ  300
QQQQQQQPCI DSHDHLYEPH HLSQHKHKHT THHQDQTYDN WDELRSVVQF AFSPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-392820319168NO APICAL MERISTEM PROTEIN
1ut4_B7e-392820319168NO APICAL MERISTEM PROTEIN
1ut7_A7e-392820319168NO APICAL MERISTEM PROTEIN
1ut7_B7e-392820319168NO APICAL MERISTEM PROTEIN
3swm_A8e-392820322171NAC domain-containing protein 19
3swm_B8e-392820322171NAC domain-containing protein 19
3swm_C8e-392820322171NAC domain-containing protein 19
3swm_D8e-392820322171NAC domain-containing protein 19
3swp_A8e-392820322171NAC domain-containing protein 19
3swp_B8e-392820322171NAC domain-containing protein 19
3swp_C8e-392820322171NAC domain-containing protein 19
3swp_D8e-392820322171NAC domain-containing protein 19
3ulx_A6e-3972011169Stress-induced transcription factor NAC1
4dul_A7e-392820319168NAC domain-containing protein 19
4dul_B7e-392820319168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11418KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673189.11e-116transcription factor JUNGBRUNNEN 1
SwissprotQ9SK557e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1J3FAL81e-115A0A1J3FAL8_NOCCA; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1J3HR651e-115A0A1J3HR65_NOCCA; Transcription factor JUNGBRUNNEN 1
STRINGBo1g138800.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-94NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]