PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 524aa    MW: 57256.3 Da    PI: 7.8485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11175198326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++ C ++++t tCk+Gd+CkF H+
  AA26G00002 175 EKDCTHYMQTRTCKFGDSCKFDHP 198
                 678********************8 PP
2zf-CCCH34.63.3e-11224250127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+++ +t  CkyG+rCkF+H++
  AA26G00002 224 PGEPDCPYYVKTQRCKYGSRCKFNHPK 250
                 5789*********************96 PP
3zf-CCCH29.71.1e-09279298726
                 SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                 +ff++tG Ck+G +CkF+H+
  AA26G00002 279 QFFMKTGKCKFGLTCKFHHP 298
                 59*****************8 PP
4zf-CCCH38.52e-12345370126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+f+++tG CkyG++C+++H+
  AA26G00002 345 PGEVDCPFYLKTGSCKYGATCRYNHP 370
                 57899********************9 PP
5zf-CCCH36.58e-12426450226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+++++tG+Ck+ +rC+F+H+
  AA26G00002 426 GQSECDYYMKTGECKFSERCRFHHP 450
                 7899********************8 PP
6zf-CCCH41.52.3e-13481503527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C+++++tG CkyG++CkF H+p
  AA26G00002 481 NCPYYMKTGACKYGATCKFDHPP 503
                 7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5173199IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041174199IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9175198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4178197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652223251IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6223250IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8225250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5228250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4229248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.878266300IPR000571Zinc finger, CCCH-type
SMARTSM003560.12266299IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7279298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4280298IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432344372IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5348371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4350369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76424452IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-5424451IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6425452IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9426450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4430451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971476504IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7476503IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5480503IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-11480503IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5482501IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAHQLYSYAL HTTYATSSVV SPAPPQKTCF SSLFGPAPAS LLAEPYFPDT TFRFLARDES  60
NGLKYSSSLG TLIPASSSSS STMYHHLSNT TASHLGYPQV QEAWPPGVEV SLASGVEPLP  120
PGVKRPSEAL YYPTVLGAHN TIGQTEAWYT TDYFTKRLKL EGTSHLPIYP QRAGEKDCTH  180
YMQTRTCKFG DSCKFDHPIW VPEGGIPDWK EAPLVPNEEY PERPGEPDCP YYVKTQRCKY  240
GSRCKFNHPK AATAGTVQYH DALPERPSEP LCTGSILQQF FMKTGKCKFG LTCKFHHPSD  300
IQLPSSSQDI GSNEGLASDP DATNNPHVTV TPALYHNSKG LPVRPGEVDC PFYLKTGSCK  360
YGATCRYNHP DRTAFIPQAA GISYPIVPST AASVNLGMVT PAASLYQTIA QPTPGALSTI  420
YPQRPGQSEC DYYMKTGECK FSERCRFHHP ADRSTAASKQ TSQQNVKLTL AGYPRRESAV  480
NCPYYMKTGA CKYGATCKFD HPPPGEVMGK TTSEAEAGGG NNTQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297430.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0I1T40.0R0I1T4_9BRAS; Uncharacterized protein
STRINGBostr.3640s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)