PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA24G00045
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 342aa    MW: 38584 Da    PI: 5.0203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA24G00045genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.3e-49251502128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGf+F+Ptd el+++yLk+k++g + ++ evi+ev+iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e+
  AA24G00045  25 FPGFKFSPTDIELISYYLKRKMDGLERSI-EVIPEVEIYNFEPWDLPdKSIVKSNSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS-GSEV 121
                 69************************999.99***************777777889**************************************.9*** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf+ grapkge+t+W+mhey +
  AA24G00045 122 IGTKRTLVFHIGRAPKGERTEWIMHEYCM 150
                 ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5315165IPR003441NAC domain
PROSITE profilePS5100550.8724166IPR003441NAC domain
PfamPF023651.2E-2426149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MATAAAGAVE VSRDSAVSMA ASIVFPGFKF SPTDIELISY YLKRKMDGLE RSIEVIPEVE  60
IYNFEPWDLP DKSIVKSNSE WFFFCARGKK YPHGSQNRRA TKMGYWKATG KERNVKSGSE  120
VIGTKRTLVF HIGRAPKGER TEWIMHEYCM NGVPLDGLVV CRLRRNTEFQ VTTIKPPQPI  180
VSPDKHENLQ NNATSESIAG WENMIDFYLS NESGQELLSE IAESSQSSQN PQVQSEEDFY  240
ADILRDDIVN LDETVGNTLI GVPMLQSEST KTRVLPLPSM VDKQMQSLLE KLPLQNDIGE  300
DNNISMSSCF LGIYSIKSIN RARWDVVAWV LVMIAVTMFY IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-412616619165NO APICAL MERISTEM PROTEIN
1ut4_B6e-412616619165NO APICAL MERISTEM PROTEIN
1ut7_A6e-412616619165NO APICAL MERISTEM PROTEIN
1ut7_B6e-412616619165NO APICAL MERISTEM PROTEIN
3swm_A7e-412616622168NAC domain-containing protein 19
3swm_B7e-412616622168NAC domain-containing protein 19
3swm_C7e-412616622168NAC domain-containing protein 19
3swm_D7e-412616622168NAC domain-containing protein 19
3swp_A7e-412616622168NAC domain-containing protein 19
3swp_B7e-412616622168NAC domain-containing protein 19
3swp_C7e-412616622168NAC domain-containing protein 19
3swp_D7e-412616622168NAC domain-containing protein 19
4dul_A6e-412616619165NAC domain-containing protein 19
4dul_B6e-412616619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA24G00045
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013527.10.0NAC domain-containing protein 60 isoform X1
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLE4MWQ40.0E4MWQ4_EUTHA; mRNA, clone: RTFL01-19-C18
STRINGBo1g063720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]