PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA245G00010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 258aa    MW: 28840.3 Da    PI: 6.6847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA245G00010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20129179255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  AA245G00010 129 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 179
                  8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-33128187No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32128187IPR001471AP2/ERF domain
PROSITE profilePS5103224.276129187IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23129189IPR016177DNA-binding domain
SMARTSM003806.8E-41129193IPR001471AP2/ERF domain
PfamPF008476.0E-14129179IPR001471AP2/ERF domain
PRINTSPR003675.0E-11130141IPR001471AP2/ERF domain
PRINTSPR003675.0E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYGQGEITAT AESNYDLMES IRRHLLEDHE LQLTESVTSS MYRRIPSFNK CFTESWGDLP  60
LKENDSEDML VYGILKDAFH NELDRSSSDL SCLSELPAVK IESPENFVTE APIAEIQSPI  120
PAEPSKGKHY RGVRQRPWGK FAAEIRDPAK NGARVWLGTF ETAEDAALAY DRAAFRMRGS  180
RALLNFPLRV NSGEPDPVRV TSKRNSSSSL SSSSSSSESG TPKRRRKTQK SSSVVADRSL  240
QLKCEVEQVT RGEHLLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-43125194170ATERF1
3gcc_A1e-43125194170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA245G00010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834952e-71AC183495.1 Brassica oleracea Contig A, complete sequence.
GenBankFJ7889402e-71FJ788940.1 Brassica napus ERF2 transcription factor (ERF2.2) mRNA, complete cds.
GenBankFJ7889412e-71FJ788941.1 Brassica napus ERF2 transcription factor (ERF2.3) mRNA, complete cds.
GenBankFJ7889432e-71FJ788943.1 Brassica carinata ERF2 transcription factor (ERF2.3) mRNA, complete cds.
GenBankFJ7889482e-71FJ788948.1 Brassica napus ERF2 transcription factor (ERF2.1) mRNA, complete cds.
GenBankFJ7889492e-71FJ788949.1 Brassica carinata ERF2 transcription factor (ERF2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538473.11e-112PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803381e-101EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLV4LBV41e-103V4LBV4_EUTSA; Uncharacterized protein
STRINGXP_010538473.11e-112(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-88ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]