PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA245G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 310aa    MW: 34718.6 Da    PI: 4.5977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA245G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-21165215255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  AA245G00006 165 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDKAAFRLRG 215
                  8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-32164223No hitNo description
Gene3DG3DSA:3.30.730.105.2E-33164224IPR001471AP2/ERF domain
PfamPF008472.5E-14165215IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-23165225IPR016177DNA-binding domain
PROSITE profilePS5103224.408165223IPR001471AP2/ERF domain
SMARTSM003804.3E-37165229IPR001471AP2/ERF domain
PRINTSPR003671.2E-10166177IPR001471AP2/ERF domain
PRINTSPR003671.2E-10189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMSTPNEVSA LWFIEKHLLD EISPVSDDRW LIGSDSVATE SSSDSSSMIF NSSAPHFSSF  60
SQSPVDFSDF EIKPEIIDLV TPRFTDFRSS PIEFESEVSD FDFSGNHSAE SDQLNSGVVS  120
DSNSQSNRKP PLKITLPTKT EWIQFAGENP PVEEVHEPVS EDKKHYRGVR QRPWGKFAAE  180
IRDPNKRGSR IWLGTFDTAI EAARAYDKAA FRLRGSKAIL NFPLEVGKWN PRAVDDDKKR  240
KRDDDDVAEV VQKVLKTDDA VKGNETLTFP SATSSLTEMC DWDLTAFLNL PLLSPLSPHP  300
PFGYSQLTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-31164226163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-31164226466ATERF1
3gcc_A2e-31164226466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA245G00006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398420.21e-130ethylene-responsive transcription factor 5
SwissprotO803411e-130EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A3P6E2V51e-128A0A3P6E2V5_BRAOL; Uncharacterized protein
TrEMBLV4LJ861e-128V4LJ86_EUTSA; Uncharacterized protein
STRINGXP_006398420.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-105ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]