PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA23G00050
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 369aa    MW: 42228.7 Da    PI: 9.1905
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA23G00050genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11101146247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT++E+ l++ + k++ +g+W++I+r +  ++t  q+ s+ qky
       AA23G00050 101 NSWTEDEHRLFLIGLKKYDKGDWRSISRNVVMTKTSTQVASHAQKY 146
                      58*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.505256IPR017884SANT domain
SMARTSM007174.5E-5354IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-10560IPR009057Homeodomain-like
CDDcd001674.78E-6748No hitNo description
PROSITE profilePS5129413.23295151IPR017930Myb domain
SuperFamilySSF466896.79E-1497152IPR009057Homeodomain-like
SMARTSM007175.6E-899149IPR001005SANT/Myb domain
PfamPF002492.4E-9101146IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-14101150IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-7102145IPR009057Homeodomain-like
CDDcd001676.85E-8102146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MASSNQWTAE EENMFEFALA IYTEESPNRW EEIASAIDKT VEEVKKHYPD LFSDVPMIEN  60
GLDDQLSNVD IPVTGLDSVH PISSLPSKQE DNKLKRKRTE NSWTEDEHRL FLIGLKKYDK  120
GDWRSISRNV VMTKTSTQVA SHAQKYYLRQ NSEKKRYSIH DLTLEGSTLA APISNIASPG  180
QQETLTPTPT PTPTPTSTSI PIPTPTPTPI STISIPILRQ LQQPRHQQTP TPRQLQQPRH  240
QETPPTLRQL QHVDSAPTLT LFPTPTLTPI LRQLQQPRFQ ETPTLTPTLR QLQQPQHQET  300
RTPTLTLFPT STRTPILRQL QQPRYQETPT LTPILTPAPR QLQQPQHQET PTLTSTPRQL  360
QQPLYIRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA23G00050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653806.11e-54transcription factor DIVARICATA-like
TrEMBLA0A397ZYQ01e-52A0A397ZYQ0_BRACM; Uncharacterized protein
STRINGscaffold_600421.12e-53(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-51MYB family protein