PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA232G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 510aa    MW: 56603.2 Da    PI: 9.1592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA232G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28120176259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++er++ ++++v++ Y g+H+h+
  AA232G00001 120 HDGYNWRKYGQKLVKGNEFIRSYYRCTQPNCKAKKQLERTS-EGQTVDTNYFGQHDHH 176
                  7****************************************.***************8 PP
2WRKY105.13.7e-33318376159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCp+kk+vers++d+k++++tYeg+H+h+
  AA232G00001 318 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPAKKHVERSSHDGKFLITTYEGKHDHD 376
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.286114178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-25115178IPR003657WRKY domain
SuperFamilySSF1182903.4E-23115178IPR003657WRKY domain
SMARTSM007742.9E-30119177IPR003657WRKY domain
PfamPF031062.9E-21121176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-34304378IPR003657WRKY domain
SuperFamilySSF1182901.7E-28312378IPR003657WRKY domain
PROSITE profilePS5081134.406313378IPR003657WRKY domain
SMARTSM007741.8E-38318377IPR003657WRKY domain
PfamPF031061.8E-26319375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MTAIREIPTF DIEQVSSSGS KAGDATTDRV EAGLATGTDK CESKKLISEA YQVKQPQEGN  60
PKPSECKELQ LVPKTGESPS KVDTTSIASE KESTTLESSV LALQSGSEGN TPLIREKVMH  120
DGYNWRKYGQ KLVKGNEFIR SYYRCTQPNC KAKKQLERTS EGQTVDTNYF GQHDHHKPLG  180
SHLVTTGAVP LYQPKHTDAF AAGSKGMRRK IKVSIEIKYF RWRFCYGQKL SGSCGQTPHQ  240
TVPKPIGKGL QVSVTSSADD LKAGTSQLSR TKGEAHKDNI PASKRRKKEG GYVEQYRLDS  300
PTNESRSVVH TQTLFDVVND GYRWRKYGQK SVKGSPYPRS YYRCSSSGCP AKKHVERSSH  360
DGKFLITTYE GKHDHDMPPG RTLTHNKTLD LEVDNAKKNE LNSKAQDPNT TPQISALLTI  420
TESQDNDGHN PEQTITREDG YEKNLDQGSA LDVKPMEQMI LSKSDKPKCK IGNQAKPGIE  480
SEDKATACQE NTEKTLGSQE QKPRTEAVQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-45118380176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA232G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178565.11e-167zinc-dependent activator protein-1
RefseqXP_010488735.11e-167PREDICTED: WRKY transcription factor 1
SwissprotQ9SI371e-168WRKY1_ARATH; WRKY transcription factor 1
TrEMBLD7L8J91e-161D7L8J9_ARALL; Predicted protein
STRINGBostr.19424s0024.1.p1e-168(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.11e-151zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]