PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA22G00035

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 312aa MW: 34449.5 Da PI: 4.2655

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA22G00035	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.4	1.8e-41	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kf +vh++FGasnv+k+l++lp+++re+a++sl+yeAear+rdP+yG+vg+i+ lqq ++ +++l ++ke AA22G00035 5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFIFVHRIFGASNVTKILNDLPHSQREEAVNSLYYEAEARLRDPIYGCVGLISFLQQCHKKIQQDLLSAKE 103 7********************************************************************************************998887 PP DUF260 100 e 100 e AA22G00035 104 E 104 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.398	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-40	5	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFIFVHRI FGASNVTKIL NDLPHSQREE 60 AVNSLYYEAE ARLRDPIYGC VGLISFLQQC HKKIQQDLLS AKEELAGYMG SDSIIPYLPP 120 LTNPPPNFMM NMEGMITQGD SLIMSEPNSS HQLQLSQSQQ LQDSDQLQLS VADAQRMASM 180 ILERGDQGMF NGGYGIENNG SGKVTSTGYN QMDVNGGIHG PSLALGSYGN GYNQMSQEIV 240 ETQGQGQDQI SSDQLQTQLM LQPPLQEGQE QSDQGQFLMN SIGDCVAATE EDEEEEFAEP 300 PMKWRKSGEQ GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA22G00035

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880519.1	1e-133	LOB domain-containing protein 10
Refseq	XP_020883060.1	1e-133	LOB domain-containing protein 10
Swissprot	O64836	1e-126	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	D7LG10	1e-132	D7LG10_ARALL; LOB domain family protein
STRING	scaffold_400352.1	1e-133	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-105	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]