PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA228G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 397aa    MW: 44439.5 Da    PI: 6.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA228G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19196246256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  AA228G00003 196 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAFKLRGE 246
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-35195255No hitNo description
Gene3DG3DSA:3.30.730.103.8E-32196254IPR001471AP2/ERF domain
SMARTSM003801.0E-40196259IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23196254IPR016177DNA-binding domain
PROSITE profilePS5103223.011196253IPR001471AP2/ERF domain
PfamPF008472.9E-13197246IPR001471AP2/ERF domain
PRINTSPR003674.1E-11197208IPR001471AP2/ERF domain
PRINTSPR003674.1E-11219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEFDEELNLC STKGKDLAPI TDRSLESKAV FGEPSSTSPR SLKKLKSPDP DRHKPYLRSS  60
SFTATSPVSF VSSSASPLAA FPFSLDSTIQ NQQQLGYVPG SYFPVYQQLV STRQSQQQMI  120
SFSAQQQQSG GSVQTPSLSG DPGALVQQQQ QYMLKYWSNT LNLSPRGRMM MMKRLSQEDS  180
EALMRQPVQP YSMTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE EAALAYDREA  240
FKLRGESARL NFPELFLNKD KQKQKQDSSV ASDSSHQKQS ALIVPVSQES REEKLQSKEG  300
KNGEDDWGVG GSDGSRSNGI EIEEQGMVCE ELGWQAMAEA WYDAIPTGWG PGSPLWDDLD  360
TSNNYMFPIP SQKEPQTQTS SSSSSSSSPS CPMRPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20195253160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA228G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555135.11e-107PREDICTED: ethylene-responsive transcription factor ERF054
SwissprotQ9M0J33e-92ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A1U8MAV15e-96A0A1U8MAV1_GOSHI; ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2P5XGY55e-96A0A2P5XGY5_GOSBA; Uncharacterized protein
STRINGXP_010555135.11e-107(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-72ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]