PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | DBB | ||||||||
Protein Properties | Length: 202aa MW: 21762.2 Da PI: 5.0286 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.5e-07 | 9 | 41 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ +++ + l+C+ ++ lC C e H+ AA21G00548 9 SQSCDYCNSSVALLYCKADSAKLCLACDKEVHS 41 578***************************995 PP | |||||||
2 | zf-B_box | 19.8 | 1.7e-06 | 53 | 85 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ +++ +++ fC + ++llC++C e H + AA21G00548 53 FLCDSCHDSPASVFCDTKRSLLCQNCDWERHTS 85 57***************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.968 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.0E-14 | 7 | 54 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 10 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.55E-6 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 9.044 | 50 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.87E-6 | 53 | 84 | No hit | No description |
SMART | SM00336 | 1.3 | 55 | 105 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEKGEEESSQ SCDYCNSSVA LLYCKADSAK LCLACDKEVH SANQLFAKHF RSFLCDSCHD 60 SPASVFCDTK RSLLCQNCDW ERHTSSSRCG GATGSSNSLH SRRPVEGFSG CPSVTEFLAI 120 VGLDDLSDKS LFLNDGERFT GVGRGGGGGG SSELLIWETP EIVSLNDLIA SGGSGHNFRA 180 MDIPSLPKAS SFFFSSYCFL FN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00548 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552787.1 | 3e-82 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 2e-73 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A087H5Y8 | 2e-81 | A0A087H5Y8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H5Y8 | 4e-82 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 8e-76 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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