PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00446
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 271aa    MW: 31198.5 Da    PI: 4.915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00446genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.5e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ v ++G  +W+ Iar  g++Rt+k+c++rw++yl
       AA21G00446 20 KGPWTEEEDAILVNFVSLHGDARWNHIARSSGLKRTGKSCRLRWLNYL 67
                     79********************************************97 PP
2Myb_DNA-binding44.73.1e-1473116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+  +++++ ++G++ W++Ia++++ gRt++++k++w++
       AA21G00446  73 RGNITLQEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5151571IPR017930Myb domain
SuperFamilySSF466892.88E-3017114IPR009057Homeodomain-like
SMARTSM007174.8E-161969IPR001005SANT/Myb domain
PfamPF002498.4E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-222174IPR009057Homeodomain-like
CDDcd001672.76E-122267No hitNo description
SMARTSM007174.5E-1372120IPR001005SANT/Myb domain
PROSITE profilePS5129417.26172122IPR017930Myb domain
PfamPF002496.3E-1373116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2175121IPR009057Homeodomain-like
CDDcd001671.37E-977116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDYERNSIL CCDEESDVRK GPWTEEEDAI LVNFVSLHGD ARWNHIARSS GLKRTGKSCR  60
LRWLNYLRPD VRRGNITLQE QFMILKLHSL WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QAKHLRCDVN SNLFKDTMKN VWMPRLAERI QAESSSSTCH ISDQSQHFDE PVSIEPDSVQ  180
FNPSYQQSFT IPTSELSATS SNSPAETQIS ALSDVQGGVN GSGFDPVQMG FTDFNDWGYV  240
SGGGDNMWTE EENYWLLQDQ FCQETTSYSI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25171224108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507918.11e-150PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J3HWJ21e-146A0A1J3HWJ2_NOCCA; Uncharacterized protein
STRINGXP_010507918.11e-149(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-149myb domain protein 2