PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00398
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 244aa    MW: 28535.6 Da    PI: 4.6522
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00398genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-183991456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++f++eq++ Le +Fe++  +  +++ +LA++lgL  rqV +WFqN+Ra++k
  AA21G00398 39 QRRFSDEQIKSLELMFESETRLEPRKKVQLARELGLHPRQVAIWFQNKRARWK 91
                579*************************************************9 PP
2HD-ZIP_I/II1185.2e-3838129293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ++rr+s+eq+k+LE +Fe+e++Lep++Kv+lareLgl+prqva+WFqn+RAR+k+kqlEk+y+ L ++y +l+++ e+L+ke++ L +el++
   AA21G00398  38 NQRRFSDEQIKSLELMFESETRLEPRKKVQLARELGLHPRQVAIWFQNKRARWKSKQLEKEYTILNQNYTNLASQFESLKKEKQGLVSELQR 129
                  68*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.02E-173195IPR009057Homeodomain-like
PROSITE profilePS5007117.0223393IPR001356Homeobox domain
SMARTSM003892.6E-153697IPR001356Homeobox domain
PfamPF000461.0E-153991IPR001356Homeobox domain
CDDcd000863.92E-143994No hitNo description
Gene3DG3DSA:1.10.10.602.7E-1839100IPR009057Homeodomain-like
PRINTSPR000311.1E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57389IPR000047Helix-turn-helix motif
PfamPF021832.5E-1493134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSGGEYSPA MMSEDPFRCC INDLTMKKKK SNKNNNNNQR RFSDEQIKSL ELMFESETRL  60
EPRKKVQLAR ELGLHPRQVA IWFQNKRARW KSKQLEKEYT ILNQNYTNLA SQFESLKKEK  120
QGLVSELQRL KEEMKKTEEE EGMCCDQAQA VALSSTDHES ENEENPPEVR PEEIYEKSHG  180
VISDEDNNNI KTEYFGGFEQ EPNLMNIVEQ ADSCLTSSDD WRGFKSDTLL DQSSSSYPWW  240
DFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00398
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182191.11e-119homeobox 7
SwissprotP468971e-120ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A178VMH61e-117A0A178VMH6_ARATH; HB-7
STRINGAT2G46680.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-103homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]