PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRF | ||||||||
Protein Properties | Length: 468aa MW: 52796.2 Da PI: 9.0522 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.4e-24 | 104 | 147 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep rCrRtDGKkWRCs++v++ +k+CErH+hrgr+rsrk +e AA21G00286 104 DPEPTRCRRTDGKKWRCSSNVVPFEKYCERHMHRGRKRSRKLVE 147 79***************************************987 PP | |||||||
2 | WRC | 67.8 | 1.4e-21 | 357 | 398 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGKkWRCs++vl+g+k+C +H+hrg +r++ + AA21G00286 357 DNEPGRCRRTDGKKWRCSKDVLPGQKYCIKHMHRGIKRRSDE 398 68***********************************99865 PP | |||||||
3 | QLQ | 44.5 | 4.7e-16 | 31 | 66 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQl ++ +Q+++y+y+aa++PvP++L+++i++ AA21G00286 31 WMKAAQLLEFQMQAMVYRYIAAGVPVPHHLVVPIWN 66 789********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.4E-8 | 30 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.355 | 31 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-9 | 33 | 65 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.435 | 104 | 148 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 105 | 147 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.949 | 357 | 402 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-18 | 359 | 396 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MEVQSSRTVF EAGSEKTTTA EEEEKRRRRP WMKAAQLLEF QMQAMVYRYI AAGVPVPHHL 60 VVPIWNSLAL SSWSNHFIRN HHPSSSSQFA ELRSKRLYHM DMPDPEPTRC RRTDGKKWRC 120 SSNVVPFEKY CERHMHRGRK RSRKLVESYE VDSSTSGVVS IKHENNDGSE STESQNVLPG 180 TMSSSSSAQV VTIASFPGEN AREDVGEAVT CPALVISEST NKSKSYNNRS RCNLEISDEE 240 IVKQRELSTR VCVVPEVEFF PKNVRGDERL PCVRKEWRSG ENGPFGRRFF PEQLSRGSEV 300 SDLSLQPAKF SGNRKNGLVA RRREWKNMIV NGGLCPSMHF SPDTVLQGHG VNRVETDNEP 360 GRCRRTDGKK WRCSKDVLPG QKYCIKHMHR GIKRRSDETA SSLSLTIANS GYCKDGDEHI 420 TSQNLKLSVP ISRVSKEMSN SSCSTDTTIT DTALRGEDNE GFSLSSGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 144 | GRKRSRKL |
2 | 389 | 394 | RGIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00286 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU550574 | 4e-34 | EU550574.1 Arabidopsis thaliana isolate CS902 GRL9 (GRL9) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880181.1 | 1e-144 | growth-regulating factor 9 isoform X1 | ||||
Refseq | XP_020885588.1 | 1e-144 | growth-regulating factor 9 isoform X3 | ||||
Swissprot | Q8S9M3 | 1e-122 | GRF9_ARATH; Growth-regulating factor 9 | ||||
TrEMBL | D7LCJ7 | 1e-142 | D7LCJ7_ARALL; At2g45480/F4L23.1 | ||||
STRING | fgenesh1_pm.C_scaffold_4002259 | 1e-143 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 1e-122 | growth-regulating factor 9 |
Publications ? help Back to Top | |||
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