PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRF
Protein Properties Length: 468aa    MW: 52796.2 Da    PI: 9.0522
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00286genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.84.4e-24104147144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+ep rCrRtDGKkWRCs++v++ +k+CErH+hrgr+rsrk +e
  AA21G00286 104 DPEPTRCRRTDGKKWRCSSNVVPFEKYCERHMHRGRKRSRKLVE 147
                 79***************************************987 PP

2WRC67.81.4e-21357398142
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                 d+epgrCrRtDGKkWRCs++vl+g+k+C +H+hrg +r++ +
  AA21G00286 357 DNEPGRCRRTDGKKWRCSKDVLPGQKYCIKHMHRGIKRRSDE 398
                 68***********************************99865 PP

3QLQ44.54.7e-163166237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                ++ aaQl ++ +Q+++y+y+aa++PvP++L+++i++
  AA21G00286 31 WMKAAQLLEFQMQAMVYRYIAAGVPVPHHLVVPIWN 66
                789********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-83066IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.3553166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-93365IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.435104148IPR014977WRC domain
PfamPF088791.1E-20105147IPR014977WRC domain
PROSITE profilePS5166721.949357402IPR014977WRC domain
PfamPF088794.9E-18359396IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEVQSSRTVF EAGSEKTTTA EEEEKRRRRP WMKAAQLLEF QMQAMVYRYI AAGVPVPHHL  60
VVPIWNSLAL SSWSNHFIRN HHPSSSSQFA ELRSKRLYHM DMPDPEPTRC RRTDGKKWRC  120
SSNVVPFEKY CERHMHRGRK RSRKLVESYE VDSSTSGVVS IKHENNDGSE STESQNVLPG  180
TMSSSSSAQV VTIASFPGEN AREDVGEAVT CPALVISEST NKSKSYNNRS RCNLEISDEE  240
IVKQRELSTR VCVVPEVEFF PKNVRGDERL PCVRKEWRSG ENGPFGRRFF PEQLSRGSEV  300
SDLSLQPAKF SGNRKNGLVA RRREWKNMIV NGGLCPSMHF SPDTVLQGHG VNRVETDNEP  360
GRCRRTDGKK WRCSKDVLPG QKYCIKHMHR GIKRRSDETA SSLSLTIANS GYCKDGDEHI  420
TSQNLKLSVP ISRVSKEMSN SSCSTDTTIT DTALRGEDNE GFSLSSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137144GRKRSRKL
2389394RGIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00286
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5505744e-34EU550574.1 Arabidopsis thaliana isolate CS902 GRL9 (GRL9) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880181.11e-144growth-regulating factor 9 isoform X1
RefseqXP_020885588.11e-144growth-regulating factor 9 isoform X3
SwissprotQ8S9M31e-122GRF9_ARATH; Growth-regulating factor 9
TrEMBLD7LCJ71e-142D7LCJ7_ARALL; At2g45480/F4L23.1
STRINGfgenesh1_pm.C_scaffold_40022591e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.11e-122growth-regulating factor 9
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]