PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00260
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 618aa    MW: 68363.1 Da    PI: 4.7587
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00260genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2683.1e-822286182374
        GRAS   2 velLlecAeavssgdle......laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                 +++L+++Ae + + d++      laq +Larl+++ ++  +      ++ R+a +++e L++ +++         +++  +++n + ++aa+k fse+s
  AA21G00260 228 IDQLFNAAELIGTTDNNngdhiiLAQGILARLNQHLNNINNnnnnkaSFCRAALHIVEVLNSLIND---------SSQVFTPENLILRIAAYKSFSETS 317
                 679999999998876665777779*********994444431222336677777777777777777.........4455556689************** PP

        GRAS  89 PilkfshltaNqaIleavege................ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakf 168
                 P+l+f ++t+Nq+Ile+ +++                + +HiiDfd+++G+QW++L+q+La + +++  sl+iT ++sp s+  ++ el+ t+e+L++f
  AA21G00260 318 PFLQFINFTTNQTILESCSNNggggggekeglglgfdQILHIIDFDVGYGGQWASLIQELAGKGKKSKlSLKITIFASPPSSisDEFELRFTEENLKSF 416
                 ******************9999999998888888886667*********************98855555*********999899*************** PP

        GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                 Aee++++fe+++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv  ++ +d+n+++F + ++++l+y  
  AA21G00260 417 AEEVKIQFEIEILSLELLLNPAYWPLSLRSseKEAIAVNLPISSVIS--------GYLPLILRFLKQISPNVVVSHDRGCDRNETPFPNAVINTLQYEI 507
                 ************988888888999998887779*******9954433........36677*************************************** PP

        GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgsl 358
                 +l+dsl +++    +e+  ++Er++++++i+n+++++ ++     e+ + Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve++     s sl
  AA21G00260 508 TLLDSLhATNQICGEETVESIERFWIRPQIQNLLMKRYKW----IERSAPWRSLFSQCGFSPASLSSTAEAQAECLLQRNSVKGFHVEKRqqslcSSSL 602
                 ******6666666679999********************9....88888***************************************99777778899 PP

        GRAS 359 vlgWkdrpLvsvSaWr 374
                 vl+W++++Lvs+SaWr
  AA21G00260 603 VLCWQRKELVSISAWR 618
                 9**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.803201593IPR005202Transcription factor GRAS
PfamPF035141.1E-79228618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPLSFDPFQG QRLLNFSSLY SIPNKIEQKL NLSPINGGFP EPTSVLEALT SPSSTTTTLS  60
SSHGGAGGTS AAAATDYDNK CEQINVDDLD GVLSDSQNQE QSIFKLIMDG VFDPGFGSGP  120
VTGSIENSNL LLSSSTFPFQ EQFIESPQIM NPEALLQSPP PKRFNSGSQQ VFPFSNPAHD  180
PDPDPFPLRR NQQFQFPFPI PFQFHQSPIT SPPPPPQGLI SDFKSEIIDQ LFNAAELIGT  240
TDNNNGDHII LAQGILARLN QHLNNINNNN NNKASFCRAA LHIVEVLNSL INDSSQVFTP  300
ENLILRIAAY KSFSETSPFL QFINFTTNQT ILESCSNNGG GGGGEKEGLG LGFDQILHII  360
DFDVGYGGQW ASLIQELAGK GKKSKLSLKI TIFASPPSSI SDEFELRFTE ENLKSFAEEV  420
KIQFEIEILS LELLLNPAYW PLSLRSSEKE AIAVNLPISS VISGYLPLIL RFLKQISPNV  480
VVSHDRGCDR NETPFPNAVI NTLQYEITLL DSLHATNQIC GEETVESIER FWIRPQIQNL  540
LMKRYKWIER SAPWRSLFSQ CGFSPASLSS TAEAQAECLL QRNSVKGFHV EKRQQSLCSS  600
SLVLCWQRKE LVSISAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2331061880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182041.10.0GRAS family transcription factor
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A1J3ETA40.0A0A1J3ETA4_NOCCA; Scarecrow-like protein 27
STRINGAT2G45160.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]