PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 151aa MW: 17225.8 Da PI: 10.3639 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.3 | 1.7e-15 | 15 | 54 | 17 | 56 |
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 e F+++++++ +++ LAkkl+Lt rqV vWFqNrRa+ k AA21G00239 15 ETFKEHSTLNPKQKVGLAKKLNLTARQVEVWFQNRRARTK 54 68************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.5 | 4.9e-35 | 15 | 89 | 16 | 91 |
HD-ZIP_I/II 16 esFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+F+e+++L+p++Kv la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l AA21G00239 15 ETFKEHSTLNPKQKVGLAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVTELR-TL 89 68**********************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.9E-7 | 8 | 60 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-13 | 15 | 54 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-14 | 15 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-13 | 15 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.00E-10 | 15 | 57 | No hit | No description |
PROSITE profile | PS50071 | 13.345 | 17 | 56 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 31 | 54 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.6E-11 | 56 | 89 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.5E-25 | 56 | 99 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MTALTAEMDR GRNSETFKEH STLNPKQKVG LAKKLNLTAR QVEVWFQNRR ARTKLKQTEV 60 DCEYLKRCCD NLTEENRRLQ KEVTELRTLK LSPHLYMHMT PPTTLTMCPS CERVAVSSAG 120 NVNPTVRRLS PQRPGPGSPW TGISLEPRPA H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 56 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00239 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506430.1 | 4e-69 | PREDICTED: homeobox-leucine zipper protein ATHB-4-like | ||||
Swissprot | P92953 | 2e-67 | ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4 | ||||
TrEMBL | D7LBT7 | 5e-66 | D7LBT7_ARALL; Uncharacterized protein | ||||
TrEMBL | R0FX19 | 5e-66 | R0FX19_9BRAS; Uncharacterized protein | ||||
STRING | XP_010506430.1 | 2e-68 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 1e-69 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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