PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00225
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 388aa    MW: 42754.2 Da    PI: 10.1119
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00225genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.23.3e-2174165187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                 +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++ +     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  AA21G00225  74 CWSPEETVALIDGYRDKWYALNRGNLKANHWEEVAESVaancPDASPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFMSSWVHFKRMEA 165
                 7**********************************9998777888899**************************9779999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2073166No hitNo description
PROSITE profilePS500906.42375135IPR017877Myb-like domain
SMARTSM005957.2E-1382171IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSDPDSPMNQ DPVPDSSPVR IQSSPRVAHL LSLPPPSSSS APDDVSAEPV SVTDLTIAST  60
PAATKSSRRL PPPCWSPEET VALIDGYRDK WYALNRGNLK ANHWEEVAES VAANCPDASP  120
KKTAVQCRHK MEKLRKRYRT EIQRARSVPV ARFMSSWVHF KRMEAMEKSP ETESGDDDND  180
DDNYRARFNK FSGGSLRNNT SLVANATPRF FNRNGTVGSG GSEGSGSGGI RIRIPTGVSI  240
AQPGPRFPGK IDQKYTANPS SVLTPNLNPN PKPGRFGVGS NYGARVVRSV EEERGNTVAK  300
RAMEMTTKTG ADSMAELASA IKLLGDTLLK TEQTKMEMTR EIETMRMEME MKRTKMILES  360
QQRIVEAFAK SVAENKKTKK QRSSYNNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397652.11e-173trihelix transcription factor ASIL2
RefseqXP_010518077.11e-173PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1J3ENR31e-177A0A1J3ENR3_NOCCA; Trihelix transcription factor ASIL2
TrEMBLA0A1J3IBR21e-177A0A1J3IBR2_NOCCA; Trihelix transcription factor ASIL2
STRINGBostr.25993s0300.1.p1e-173(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-135Trihelix family protein