PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA21G00131

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 969aa MW: 107034 Da PI: 4.9067

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA21G00131	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.5e-26	578	660	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg................................vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ AA21G00131 578 EKNVSLSVLQQYFSGSLKDAAKSLGgetccvphifsavyaillpktdyptlnldfsaVCPTTLKRICRQHGIMRWPSRKINKV 660 89*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.491	567	680	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-24	580	660	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-23	861	954	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.3E-24	866	948	No hit	No description
SMART	SM00666	1.3E-23	869	951	IPR000270	PB1 domain
PROSITE profile	PS51745	22.327	869	951	IPR000270	PB1 domain
CDD	cd06407	4.88E-36	870	950	No hit	No description
Pfam	PF00564	9.8E-17	870	950	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MEHPFASREK GFGYSDNPTE QMEGLSSSFG SGVRNLISDE ILNSTSELMN FDSFATWCNS 60 PSAADILFAQ YGLSTSQPMH FGALNGFHAA ESKTASLSGL SRSFHDLERS YYDEEMSSPF 120 DCLPDSDEFS GKRRRGANQK NGFPNVVNCT IPRSLSYSLN EKMLKALSLF MESSGEGILA 180 QIWTPIKKGD QYLLSTCDQA YLLDPKLSRY REVSRNFTFS AEASQCSFPG LPGRVFISGV 240 PEWTSNVIYY KTDEYLRMEH AIDNEVRGSI AIPILEATGT SCCAVMELVT SREKPNFVIE 300 MDSVCRALQT VNLRTSAIPR PQYLSSNQRD ALAEIQDVLR AVCHAHKLPL ALVWIPCSRR 360 KGGKNEFVKS CRPNSDESCV LCIEETACYV NDMEMEGFVH ACLEHYLREK QGIVGKAFIS 420 NQPFFSSDVK TYDIGEYPLV QHARKYGLNA AVAIKLRSTH TGEDDYILEL FLPVSMKGSS 480 EQQQLLDSLS GTMQRICRTL RTISDVVSTT KEVTKAGFQS GEMSNFLQAT CSEKFNSTRS 540 IFSDMTSDKE NSIMGSRGSF EQDMSKARGP EKKKSSTEKN VSLSVLQQYF SGSLKDAAKS 600 LGGETCCVPH IFSAVYAILL PKTDYPTLNL DFSAVCPTTL KRICRQHGIM RWPSRKINKV 660 NRSLRKIQTV LDSVQGVEGG LKFDPTTGEF VAIGPLVQEC DTQKVSSVHC NDGDVRSQEK 720 MAEEASLDFF EVKSVDNAIK LEEDATTNQA GPGSFMEVNI GGQSWAWITE QSSFNDGDDC 780 GMDKSSEGLK NDENFSIPGC LSSLALADEM EMPIQCGGSI VEPNQSMSCS MSDSSNGSGA 840 VMLASSSTSM EDWNQMRTTH NNSSANSSTL TVKATFREDT IRFKFEPSTG CSQLYNEVGR 900 RFKLQDGSFQ LKYLDDEEEW VMLVTESDLQ ECLEILYAMG KNTVKFLVRD LPAPIGSSAG 960 SNGFLGTGS

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MEHPFASREK GFGYSDNPTE QMEGLSSSFG SGVRNLISDE ILNSTSELMN FDSFATWCNS  60
PSAADILFAQ YGLSTSQPMH FGALNGFHAA ESKTASLSGL SRSFHDLERS YYDEEMSSPF  120
DCLPDSDEFS GKRRRGANQK NGFPNVVNCT IPRSLSYSLN EKMLKALSLF MESSGEGILA  180
QIWTPIKKGD QYLLSTCDQA YLLDPKLSRY REVSRNFTFS AEASQCSFPG LPGRVFISGV  240
PEWTSNVIYY KTDEYLRMEH AIDNEVRGSI AIPILEATGT SCCAVMELVT SREKPNFVIE  300
MDSVCRALQT VNLRTSAIPR PQYLSSNQRD ALAEIQDVLR AVCHAHKLPL ALVWIPCSRR  360
KGGKNEFVKS CRPNSDESCV LCIEETACYV NDMEMEGFVH ACLEHYLREK QGIVGKAFIS  420
NQPFFSSDVK TYDIGEYPLV QHARKYGLNA AVAIKLRSTH TGEDDYILEL FLPVSMKGSS  480
EQQQLLDSLS GTMQRICRTL RTISDVVSTT KEVTKAGFQS GEMSNFLQAT CSEKFNSTRS  540
IFSDMTSDKE NSIMGSRGSF EQDMSKARGP EKKKSSTEKN VSLSVLQQYF SGSLKDAAKS  600
LGGETCCVPH IFSAVYAILL PKTDYPTLNL DFSAVCPTTL KRICRQHGIM RWPSRKINKV  660
NRSLRKIQTV LDSVQGVEGG LKFDPTTGEF VAIGPLVQEC DTQKVSSVHC NDGDVRSQEK  720
MAEEASLDFF EVKSVDNAIK LEEDATTNQA GPGSFMEVNI GGQSWAWITE QSSFNDGDDC  780
GMDKSSEGLK NDENFSIPGC LSSLALADEM EMPIQCGGSI VEPNQSMSCS MSDSSNGSGA  840
VMLASSSTSM EDWNQMRTTH NNSSANSSTL TVKATFREDT IRFKFEPSTG CSQLYNEVGR  900
RFKLQDGSFQ LKYLDDEEEW VMLVTESDLQ ECLEILYAMG KNTVKFLVRD LPAPIGSSAG  960
SNGFLGTGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA21G00131

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023639704.1	0.0	protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	Cagra.3706s0034.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]