PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 21557.8 Da PI: 10.0727 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.3 | 4e-26 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eY++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r+ ra+tr gCka+++vk +++gkw +tk+++eHnH+l+ AA21G00121 12 FYDEYSRHIGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSMRKARASTREGCKAMIHVKFDRSGKWIITKFVKEHNHPLV 100 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-24 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEFESEDAAK LFYDEYSRHI GFVMRVMSCR RSEKDGRILA RRFGCNKEGH CVSIRGKFGS 60 MRKARASTRE GCKAMIHVKF DRSGKWIITK FVKEHNHPLV ISPREARQTL DEKDKRIQEL 120 TTELRNKKRL CAAYKEQLEA FVKIIEEYNH QITSKVENVV KNLKDFESID RELLQSKQDR 180 SLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00121 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508449.1 | 1e-113 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 2e-20 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | D7LJZ7 | 1e-110 | D7LJZ7_ARALL; Far-red impaired responsive family protein | ||||
STRING | XP_010508449.1 | 1e-112 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-114 | FAR1 family protein |
Publications ? help Back to Top | |||
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