PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 34065.6 Da PI: 8.9457 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.9 | 1e-49 | 14 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 pGfrFhPtd+el+ +yL++kve+k+++l + ike+diyk++PwdLp++ k +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s + + AA21G00088 14 LPGFRFHPTDDELLGFYLRRKVENKSIKL-QLIKEIDIYKFDPWDLPRESKVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-NLDCI 110 59***************************.89***************988999****************************************.9999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkk+Lv+y g+a kg+ktdW+mhe+rl AA21G00088 111 GLKKSLVYYLGSAGKGTKTDWMMHEFRL 138 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.528 | 13 | 189 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-53 | 14 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-25 | 15 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-53 | 177 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSNRGEEEDD DVRLPGFRFH PTDDELLGFY LRRKVENKSI KLQLIKEIDI YKFDPWDLPR 60 ESKVGEKEWY FFCMRGRKYR NSVRPNRVTG SGFWKATGID KPVYSNLDCI GLKKSLVYYL 120 GSAGKGTKTD WMMHEFRLPS SNAKTEAPVL QAVSLFYQLG LTGRFSFSNL IRLCLWGQEV 180 WTLCRIFKRI TSNRNPNIVP LNRKPVISLT DSCSKTSSSL DSDHTSHRIV VDSLPPQLQQ 240 NPYWNQQHTS GLNLPTYTCH DHNNFLSFGD INGGDFIGDA TSWDELRSVI NGNTKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 15 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 15 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 15 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 15 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-50 | 15 | 195 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 15 | 195 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00088 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133561.1 | 1e-151 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 1e-146 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M4C7V4 | 1e-149 | M4C7V4_BRARP; Uncharacterized protein | ||||
STRING | Bra000282.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-123 | NAC domain containing protein 42 |