PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00063
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 264aa    MW: 29432.5 Da    PI: 5.7154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00063genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-3074132259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver++ dp+ +++tY geHnh+
  AA21G00063  74 SDSWTWRKYGQKPIKGSPYPRGYYKCSSSkGCPARKQVERNRVDPTNLVVTYAGEHNHP 132
                 69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-3264134IPR003657WRKY domain
SuperFamilySSF1182901.57E-2667134IPR003657WRKY domain
PROSITE profilePS5081132.78768134IPR003657WRKY domain
SMARTSM007741.1E-3573133IPR003657WRKY domain
PfamPF031061.4E-2575132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHRRLEAQQS DDEDDETYNN DVVPESPSSC EDSKISKPSS KKSRKSSIEK KRVVSLPIAD  60
VERSKSRVEV YPPSDSWTWR KYGQKPIKGS PYPRGYYKCS SSKGCPARKQ VERNRVDPTN  120
LVVTYAGEHN HPLPSASTTA GIHKFHQNRS NIVLKATKKE NDEDQVKEPV GLDLSHVDSP  180
LLLGSCYSAP EEFGWFYDVA FSAGADVAME RVFSAGEEEE EESLFGDLDD LPDCAAMFRR  240
GTVAGGDRNR RCDFGAVSLC DSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2051135680Disease resistance protein RRS1
5w3x_D3e-2051135680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_851020.11e-121WRKY DNA-binding protein 69
SwissprotQ93WV51e-120WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A178V7K81e-119A0A178V7K8_ARATH; WRKY69
TrEMBLA0A1J3GCN71e-119A0A1J3GCN7_NOCCA; Putative WRKY transcription factor 69 (Fragment)
STRINGAT3G58710.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-107WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]