PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA218G00009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NF-YC | ||||||||
Protein Properties | Length: 284aa MW: 31301.1 Da PI: 6.2442 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.1 | 8.1e-56 | 110 | 213 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fwe+q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdflvdi AA218G00009 110 QLQAFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 207 89******99999************************************************************************************* PP NF-YC 96 vprdel 101 vpr++l AA218G00009 208 VPREDL 213 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.87E-32 | 103 | 204 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 124 | 196 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.5E-22 | 132 | 195 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
TQISPKSNNI NQIFLTNFVS SRNKIKGSSS NFQISSVSFC DTNSKMDQHD HGQSAAMNYG 60 TNPYQSNPMT TAANMATAAG GVAPPSSVAP GQLAFHQIHQ QQQQQQLAQQ LQAFWENQFK 120 EIEKTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVVFA RACEMFILEL TLRSWNHTEE 180 NKRRTLQKND IAAAVTRTDI FDFLVDIVPR EDLRDEVLGS IPRGAVPEAA AAAAGYPYGY 240 LPAGTNPMGN PGMVMGNPGG YPPNPYMGQP MWQQQGPDQP DTEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-63 | 118 | 210 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 188 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA218G00009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475715.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_010489582.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 1e-132 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | V4KXE4 | 1e-138 | V4KXE4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010475715.1 | 1e-141 | (Camelina sativa) | ||||
STRING | XP_010489582.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-85 | nuclear factor Y, subunit C9 |