PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA204G00012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 23451.7 Da PI: 9.0166 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.9 | 3.4e-35 | 5 | 135 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 +Gf F+Ptd+el+ +yLkkk g + +e++i+e+++++++Pw+L+ k+k + wyfF + ++g+r+nr+t+sg+Wk tg+ +++++ AA204G00012 5 VGFGFRPTDDELIGYYLKKKNLGMTWLVEQIITEINVCSFDPWELRFesKLKPRYPIWYFFGAK---CENGDRQNRKTSSGFWKITGTPVDIKDRwgr 99 7************************999899**************9522554455599***876...5689***********************9999 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g kk Lvf+k r p+ k +Wvmhey+l AA204G00012 100 wsgDRGKIGYKKCLVFHKDRIPTMGKIEWVMHEYHL 135 9987888****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.609 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-38 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVETVGFGFR PTDDELIGYY LKKKNLGMTW LVEQIITEIN VCSFDPWELR FESKLKPRYP 60 IWYFFGAKCE NGDRQNRKTS SGFWKITGTP VDIKDRWGRW SGDRGKIGYK KCLVFHKDRI 120 PTMGKIEWVM HEYHLTILPE NQRTHVIYRV EYKGDDISFV SDHPLKPNIA FLHDISSGVY 180 NGDGRAKKES HEEEKGRRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-21 | 6 | 135 | 18 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA204G00012 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586612.1 | 5e-72 | PREDICTED: NAC domain-containing protein 1-like | ||||
Swissprot | Q0WV96 | 7e-57 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0D3C716 | 1e-70 | A0A0D3C716_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002850.1 | 2e-71 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 3e-59 | NAC domain containing protein 1 |
Publications ? help Back to Top | |||
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