PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA1G00165

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRAS

Protein Properties

Length: 626aa MW: 72043.4 Da PI: 5.3668

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA1G00165	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	404.6	9.7e-124	248	622	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++lL++cA+av+s d+++a + L++++ ++s +gd +qRla+yf+eAL+ar++++ s l+++ ps t+ ++++ l+a+klf++v+Pi+ + +++aN+ AA1G00165 248 MRNLLMQCAQAVASFDQRRAAEKLKEIRFHSSCNGDGTQRLAFYFAEALEARITGTISPLVSTPVPSITT--SMVDILKAYKLFVHVCPIYVMDYFAANK 345 579**************************************************999998887777666..59********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I+e + +++r+Hi+Df+i +G+QWp+L+qaL++Rp+gpp lR+Tg++ p++g +e++eetg+rL++f+++++vpfefn+ +ak++e+++l+eL +++ AA1G00165 346 SIYELALNAKRLHIVDFGILYGFQWPCLIQALSNRPGGPPVLRVTGIELPQPGfrPSERIEETGRRLKRFCDKFHVPFEFNF-IAKKWESISLDELMINQ 444 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivn 296 +E ++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e + +ns+ F++rf eal ++s+lfd++ea++ e+ ++r+ +E+ell r++++ AA1G00165 445 EEITVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDIKPDLFVLAEINGMYNSPFFMTRFREALFHFSSLFDMFEATIQGEDeyNNRTLLEKELLVRDVMS 544 *********************************************************************99998888899************ PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+acegaer++r et+++W+ r+ +aGFkp++l+++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+ AA1G00165 545 VIACEGAERFARPETYKQWQVRILRAGFKPATLNKQIMKEAKEIVRKRYHRDFVIDNDNHWMLQGWKGRIIYALSCWK 622 *********************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.167	222	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-121	248	622	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MDALLQHSID GFKFENGSGS YCNPRNNLNP GTNHFPSFCQ PDSPDQFSPQ DSPPLPSPPL 60 MNLDYAPTLR YISDMLMEEE DLEDQSRLLQ DNLALQAAER SFYEVLQDQD QEQTPPSDQQ 120 HSTSPDQNSD DSYDDSPGNL TGLHQTAKSF TGSLEVEDFV PYEKSQRRYH HRDEEEIDVE 180 IGRRNKQPAI STSEMEELAE KFEDVLLVCK ASQKQEANKE KNPPSNRTGR VKNSSNKSKT 240 QKSDTVDMRN LLMQCAQAVA SFDQRRAAEK LKEIRFHSSC NGDGTQRLAF YFAEALEARI 300 TGTISPLVST PVPSITTSMV DILKAYKLFV HVCPIYVMDY FAANKSIYEL ALNAKRLHIV 360 DFGILYGFQW PCLIQALSNR PGGPPVLRVT GIELPQPGFR PSERIEETGR RLKRFCDKFH 420 VPFEFNFIAK KWESISLDEL MINQEEITVV NCIHRLQYTP DETVSLDSPR DTVLKLFRDI 480 KPDLFVLAEI NGMYNSPFFM TRFREALFHF SSLFDMFEAT IQGEDEYNNR TLLEKELLVR 540 DVMSVIACEG AERFARPETY KQWQVRILRA GFKPATLNKQ IMKEAKEIVR KRYHRDFVID 600 NDNHWMLQGW KGRIIYALSC WKPAEK

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MDALLQHSID GFKFENGSGS YCNPRNNLNP GTNHFPSFCQ PDSPDQFSPQ DSPPLPSPPL  60
MNLDYAPTLR YISDMLMEEE DLEDQSRLLQ DNLALQAAER SFYEVLQDQD QEQTPPSDQQ  120
HSTSPDQNSD DSYDDSPGNL TGLHQTAKSF TGSLEVEDFV PYEKSQRRYH HRDEEEIDVE  180
IGRRNKQPAI STSEMEELAE KFEDVLLVCK ASQKQEANKE KNPPSNRTGR VKNSSNKSKT  240
QKSDTVDMRN LLMQCAQAVA SFDQRRAAEK LKEIRFHSSC NGDGTQRLAF YFAEALEARI  300
TGTISPLVST PVPSITTSMV DILKAYKLFV HVCPIYVMDY FAANKSIYEL ALNAKRLHIV  360
DFGILYGFQW PCLIQALSNR PGGPPVLRVT GIELPQPGFR PSERIEETGR RLKRFCDKFH  420
VPFEFNFIAK KWESISLDEL MINQEEITVV NCIHRLQYTP DETVSLDSPR DTVLKLFRDI  480
KPDLFVLAEI NGMYNSPFFM TRFREALFHF SSLFDMFEAT IQGEDEYNNR TLLEKELLVR  540
DVMSVIACEG AERFARPETY KQWQVRILRA GFKPATLNKQ IMKEAKEIVR KRYHRDFVID  600
NDNHWMLQGW KGRIIYALSC WKPAEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-47	254	623	25	380	Protein SCARECROW
5b3h_A	1e-47	254	623	24	379	Protein SCARECROW
5b3h_D	1e-47	254	623	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA1G00165

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_200753.1	0.0	GRAS family transcription factor
Swissprot	Q9LTI5	0.0	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	A0A178UGG6	0.0	A0A178UGG6_ARATH; Uncharacterized protein
STRING	AT5G59450.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]