PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA1G00030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 26025.2 Da PI: 6.8881 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.9 | 1.3e-12 | 5 | 50 | 3 | 48 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +Gf F+Pt+ elv +yL+ k++g++ + e+i+e+diy+++Pw+L+ AA1G00030 5 VGFGFRPTEAELVGYYLRYKLTGSTSFVGETINEIDIYSFDPWELR 50 6************************888899**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 10 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-20 | 4 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-8 | 5 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGGRVGFGFR PTEAELVGYY LRYKLTGSTS FVGETINEID IYSFDPWELR LINRLGKRLL 60 DSGRLADNLG FHKGRIVRPG KADWVMHEYH LTIVPENKRT HVLCKVEYKG DDISFLYDNT 120 TKFSPAFYKQ PSINGGSPFN TQTHGHLSHF PLDNDFSEID FGEISDSNSE ASVGNPNELC 180 FTPILQLGTV DQSTIGREQY GEEYNNYKAQ ELKIELKGKE KMKRRWR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA1G00030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 5e-29 | NAC domain containing protein 1 |