PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00027
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 459aa    MW: 53451.7 Da    PI: 5.2208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00027genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24.1e-3351633128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..............................kvkaeekewyfFskrdkkyatg 71 
                +Gf F+Ptd+elv +yL+ k++g +  +ee+ike+++y+++PwdL+ k                              kvk++   wyfF k+++    +
  AA1G00027   5 VGFGFRPTDDELVGYYLQYKTQGMTWLVEEAIKEINVYSFDPWDLRcKlyfnfflnlindlskssrfftvpisvtvqsKVKSRYPVWYFFNKHSN----S 100
                7************************999899**************85489**********************997765555555699***99876....4 PP

        NAM  72 krknratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +r++r t+sg+Wk tg   +++++      ++ ++g k++Lvf+kg++ k  ktdWvmhey+l
  AA1G00027 101 DRQSRRTSSGFWKITGDPVDIKDRwgiwsgTRDKIGQKRVLVFHKGKNAKLGKTDWVMHEYHL 163
                6899999****************99999988888****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.1513180IPR003441NAC domain
SuperFamilySSF1019414.32E-32549IPR003441NAC domain
PfamPF023651.0E-205163IPR003441NAC domain
SuperFamilySSF1019414.32E-3278180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDDMVGFGFR PTDDELVGYY LQYKTQGMTW LVEEAIKEIN VYSFDPWDLR CKLYFNFFLN  60
LINDLSKSSR FFTVPISVTV QSKVKSRYPV WYFFNKHSNS DRQSRRTSSG FWKITGDPVD  120
IKDRWGIWSG TRDKIGQKRV LVFHKGKNAK LGKTDWVMHE YHLTISPENQ TYVICRVEYK  180
GDDISFLSDY TTEPGSTFVH HPANSAGSVV DQSVQRNLES SNNFYAYDST NQMDQSVGNW  240
EFFNNLSKYD SEIQHFASNF NTQEQASYFA SNDNQRQKLW DYDIENIPNF SLDEVQRHSD  300
TYMEEKYNEY QPKNPVTKVF NDFSSDSDNE STLFGDTSSS VDSVGNPNEL CFTPNPPLSS  360
IVQHPIITEL QTTYEPQKVK MELQGKEKVK NELELKMAKD SCINKTLATN RSKQSWFIVE  420
DENTENKTPR WIYLRNMFVA ALLLLAVIGW ITLFFPLCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-18616318140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.12e-88NAC domain containing protein 1