PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00023
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 438aa    MW: 50201.7 Da    PI: 5.3286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00023genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1126.7e-3551433127
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                +Gfr  Pt++e v ++L  k+ +k+l ++e+i+e++iyk++Pw+L+         k++++++ wyfF++ +++ya+g+r++r+t+sg+Wk tg   ++++
  AA1G00023   5 VGFRLCPTEDETVGCHLYYKLMKKELLANEFINEINIYKSDPWELRLiveifvksKFQSRDSVWYFFVPVENNYANGDRQKRTTNSGFWKITGDPLPIFD 104
                6************************999999**************84578999888888999************************************** PP

        NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyr 127
                +      ++  +g k++L f+kg++p+  k+dWvmhey+
  AA1G00023 105 RwgrwsgNRGPIGYKRVLRFHKGKTPNVGKADWVMHEYH 143
                99999877778***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.3853181IPR003441NAC domain
PfamPF023651.0E-155143IPR003441NAC domain
SuperFamilySSF1019417.45E-345181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDWVGFRLC PTEDETVGCH LYYKLMKKEL LANEFINEIN IYKSDPWELR LIVEIFVKSK  60
FQSRDSVWYF FVPVENNYAN GDRQKRTTNS GFWKITGDPL PIFDRWGRWS GNRGPIGYKR  120
VLRFHKGKTP NVGKADWVMH EYHNTMVESD LVSILALVYV FVEFLPDNLI RTHVICRVEY  180
KGDNTSFISN NATEPCPAFM HHLTNGAGSV LDQLFPGNWG STNTSFEYAP TDQMGQLVQG  240
NCVPSGHLSE YNPTNQMQQH FTGNFNTQDQ VQFTSNNNEI PMLPDKDLKE IFDYLFNNGE  300
PNSCSSMRAD CNEHRPKDPV TRVFDDYSSD SDNESTLFGD TSSSEDSVGN PNELISAPIP  360
PLNSMETEEV KMVLQSKEKE LECKMAEEFC VQKAPTTNKS KIEKKSHKSP KWIYLRIKTI  420
IIAIFLLLFI IASTTLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20614318139Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.12e-64NAC domain containing protein 1