PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00471
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 422aa    MW: 46300.6 Da    PI: 8.6034
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00471genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1373129155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  AA19G00471  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 129
                 57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1573138IPR016177DNA-binding domain
PfamPF008476.0E-973129IPR001471AP2/ERF domain
PROSITE profilePS5103218.51874137IPR001471AP2/ERF domain
SMARTSM003805.3E-1974143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1274138IPR001471AP2/ERF domain
PRINTSPR003674.2E-57586IPR001471AP2/ERF domain
PRINTSPR003674.2E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASISSSDQG PKTEAGCSGG GVGGGGVESS ETVAASGQML LYRGFKKAKK ERGCTAKERI  60
SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YTRDLEEMQN LSREEYLASL RRKSSGFSRG IAKYRGLQSR  180
WDASTSRVPG PDYFSNIHYG AGDDRGTEGD FLGGFCLERK IDLTGYIKWW GVNKTRQPES  240
SSKASEDAKV EDAGSELKTL EHASQATEPY KSPHLGVFRD KKKEKAISSP TTTSALSILS  300
ESPAYKVLEE KVLKIQESTT ENDENANHEI INREKNHGKG IEKQVVSHGV PLGGGATLSL  360
QKNMYPLSSL LSAPLLTNYN ALDPLADPIL WTPFLPAGSS HTSEVTKTET SCSTYSYLPQ  420
EN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881180.0AY088118.1 Arabidopsis thaliana clone 41462 mRNA, complete sequence.
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884200.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLD7LHA70.0D7LHA7_ARALL; Uncharacterized protein
STRINGBostr.11568s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein