PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA19G00350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28480.7 Da PI: 5.9615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.3e-10 | 12 | 59 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT+eE +++ +a + + + tW Ia+ ++ g+t +++ ++ + AA19G00350 12 TWTPEENKRFEKALAFHDDKdnpnTWLQIAQAIP-GKTVDDVIQHYKEL 59 5*****************99**************.***********977 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.9e-16 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W+ Ia+ k+Rt+ q+ s+ qky AA19G00350 120 PWTEEEHRLFLMGLKKYGKGDWRNIAKNYVKTRTPTQVASHAQKY 164 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.496 | 8 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-7 | 9 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-7 | 12 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.37E-10 | 12 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-8 | 12 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 12 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-14 | 111 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.431 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-17 | 115 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-13 | 117 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 120 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-12 | 120 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASMNWLFQE ATWTPEENKR FEKALAFHDD KDNPNTWLQI AQAIPGKTVD DVIQHYKELL 60 DDVSDIEAGL IPIPGYNTDY FFNLENSNYD YIVGDKRSSP AISNSFRSPM PEKERKKGVP 120 WTEEEHRLFL MGLKKYGKGD WRNIAKNYVK TRTPTQVASH AQKYFIRQLT DGKDKRRSSI 180 HDITTVNIPD VDLTVTGATS TNTNIDATST IFSNTNIPNS SFDVFFRSNL GYGLASASSC 240 DYIHTFSQEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-15 | 13 | 78 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA19G00350 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398645.1 | 1e-111 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-75 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4LJX8 | 1e-110 | V4LJX8_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.6251s0088.1.p | 1e-112 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14884 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 1e-110 | MYB family protein |
Publications ? help Back to Top | |||
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