PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00240
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family E2F/DP
Protein Properties Length: 374aa    MW: 40923.1 Da    PI: 6.9212
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00240genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27102184271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  AA19G00240 102 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfavpntngtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 184
                 689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.5E-1331374IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.5E-4697190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.5E-35101184IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-25103184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21104185IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.23E-43189292IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-64191337IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.07E-41191298No hitNo description
PfamPF087811.7E-41192306IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MATGSNSNHN HHDDGGNKSN HNNTPGTRSW GTAASGQSVS TSGSIGSPSS RSEQATTMAT  60
SASDSTFLRL NNLDIQGDDA GSQGASGKKK KRGQRAVGPD KSGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFAVPN TNGTSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTSL SDIEELKNER LALRNRLDKK AAYLQELEEQ YVGLQNLIQR NEQLYSSGNA  240
PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNFVLK TMKFCERSPA  300
NGHNSQLSHN FSSENANEGP STTPAPPDTY QSHHQPQLQQ PQPQGIPNEA AAAVRTPSSA  360
PPPGMIKSRV KPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3795189193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879105.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD7LWN70.0D7LWN7_ARALL; Uncharacterized protein
STRINGBostr.2128s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-164Transcription factor DP