PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00178
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 1297aa    MW: 145075 Da    PI: 6.3638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00178genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001312091232223
                  EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                  +C+   Cgk F+ + +L+ H+r+H
  AA19G00178 1209 RCTeqGCGKKFRAHKYLVLHQRVH 1232
                  688889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.9E-151555IPR003349JmjN domain
PROSITE profilePS5118313.731657IPR003349JmjN domain
PfamPF023752.7E-151750IPR003349JmjN domain
SMARTSM005583.2E-47272441IPR003347JmjC domain
PROSITE profilePS5118435.496275441IPR003347JmjC domain
SuperFamilySSF511971.24E-25286438No hitNo description
PfamPF023734.7E-38305424IPR003347JmjC domain
SMARTSM003554111851207IPR015880Zinc finger, C2H2-like
SMARTSM003550.03112081232IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46412081237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-812091237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012101232IPR007087Zinc finger, C2H2
SuperFamilySSF576675.89E-1112241266No hitNo description
Gene3DG3DSA:3.30.160.601.5E-1012381262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.5712381267IPR007087Zinc finger, C2H2
SMARTSM003550.001412381262IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012401262IPR007087Zinc finger, C2H2
SuperFamilySSF576673.5E-812561290No hitNo description
Gene3DG3DSA:3.30.160.602.2E-912631291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.712681294IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012701294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1297 aa     Download sequence    Send to blast
MGNVEIPDWL KGLALAPVYR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
FHNLNKSLLR CPELTSGVDT SKICQEDTAV FTTRQQELGQ SGKRTKGGES TKANSQRNAV  120
KQVWQSGGVY TLEQFETKSK AFYRSQLGMI KEVTPLVVEA LFWKAASEKP IYIEYANDVP  180
GSAFGEPEGH FRHVRQRKRR GRGFYQRKAE IQDQMDGNGS EEPSSKNGEN ALPEVEKASL  240
ASPSSSFHLG SHSSKQTSVN FIDEMEGTAG WKLSNSSWNL QMIARSPGSV TRFMPDDIPG  300
VTSPMVYIGM LFSWFAWHIE DHELHSMNYL HTGSPKTWYA VPCDYALEFE DVIRKNSYAK  360
NTDQLAALTQ LGEKTTLVSP EMIVASGIPC CRLVQNPGEF VVTFPRSYHV GFSHGFNCGE  420
AANFGTPQWL SVAKEAAVRR AAMNYLPMLS HQQLLVPRSL LPGGRSSRLR DRQREEREFL  480
VKKAFVEDIL NENKNLSVLV QEPGFRLVMW DPDLLPRHSA AALAAAGGTA APAVLSPAVA  540
KGELEGHPEM QNKEKTTLLE ELSLFMEKLN DVYYDDDDGL LNDFQVDTGT LACVACGVLG  600
FPFMSVVQPS EKALKDSLGR QGEKDDPEIM ASSSESSDCK WNTSCRYRRP RIFCLDHTIE  660
LQRLLQSRDG LNFLVICHKD FQKIKAHAAV VAEEVKIPFS YDDVLLETAS KEDLSLIDLA  720
IEDEENNEHG VDWTSKLGIN LRYCVKVRKN YPARKIQHAM SLGGLFSDTS QMLDISTIKW  780
LQRKSRSKSK PSSSSNLKLR EHLEVKVDER LLENLDSPVG RKVEKIIQYS RKKKLNSKDS  840
GGQVQELGII NHNEMDNEIG DSEGAAIGRD GVSFDEDPCS SSLAESHVEE HLETTVKFGS  900
TLDGNVRNNC STLIAVSVDA TSITREQQGH SMTSDDYGSN SSSHVVVTQT LSAFTGDNHD  960
EQRKLSDEYV CNDVCGRDDQ EAVKMSSDQQ FEEPRSTLTN TKDEEQSLQV AQINNKTAPS  1020
DDTQADGEEA SCSLMEDPET NIASENVVVD MTQDSELPAR SNLSSSDCGQ ASSNILQTPD  1080
DEFNTASKVS ISENTDTINV PSSNVTEAKK KRKIESESET NNNLESKLGF IRSPCEGLRS  1140
RGRREATSET SVKHNEEKPT AKRPKKTSKT ASVQHQEAAS TTTRHRCYTE GCRMSFESKT  1200
ELQTHKKNRC TEQGCGKKFR AHKYLVLHQR VHNDERPFEC PWKGCSMTFK WQWARTEHLR  1260
LHTGERPYTC KVEGCELSFR FVSDYSRHRR KTGHYVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-56255461137352Transcription factor jumonji (Jmj) family protein
6ip4_A4e-56255461137352Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398879.10.0probable lysine-specific demethylase ELF6 isoform X2
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLV4LD480.0V4LD48_EUTSA; Uncharacterized protein
STRINGXP_006398879.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]