PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 245aa    MW: 28630.4 Da    PI: 7.7838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00209genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l++++ + G g+W++ a   g++Rt+k+c++rw++yl
       AA18G00209 23 RGPWTPEEDIKLINYISLNGEGRWNSLAPSAGLNRTGKSCRLRWLNYL 70
                     89********************************************97 PP

2Myb_DNA-binding46.77.3e-1577119246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g  + +E++++++++ ++G++ W++Ia++++ gRt++++k++w++
       AA18G00209  77 GHISLQEQLIILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      666889***************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7861874IPR017930Myb domain
SMARTSM007179.1E-152272IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-2922117IPR009057Homeodomain-like
PfamPF002491.1E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-222477IPR009057Homeodomain-like
CDDcd001672.67E-102570No hitNo description
SMARTSM007171.4E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129417.61275125IPR017930Myb domain
PfamPF002491.0E-1377119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2178123IPR009057Homeodomain-like
CDDcd001671.93E-980119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMNIKKKEEE EEEEKKKMEV IRRGPWTPEE DIKLINYISL NGEGRWNSLA PSAGLNRTGK  60
SCRLRWLNYL RPDIRRGHIS LQEQLIILQL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VHKHAKLLKC DVNSKQFKDT MKHLWMPRLV EKIASQNVET FMDASSVTTT MSTSTSSESM  180
ETEASHGYSD LNGYYNGGNT IQMGNVANQV EHEILINHVT NGVDAFENLW SVDEFNDWLL  240
QQHFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-242111725120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00209
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393501.12e-98transcription factor MYB78
SwissprotQ10MB44e-81MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1J3IH381e-101A0A1J3IH38_NOCCA; Uncharacterized protein
STRINGXP_006393501.19e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.15e-84myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]