PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA18G00140

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 465aa MW: 50813.6 Da PI: 4.6727

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA18G00140	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.6e-31	257	315	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ AA18G00140 257 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 315 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	250	317	IPR003657	WRKY domain
PROSITE profile	PS50811	33.006	251	317	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	254	317	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	256	316	IPR003657	WRKY domain
Pfam	PF03106	7.2E-26	258	315	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDNFQGDLTD VVRGLGSGHV SSSPGPPEGP SPTTLSPPPP PQSTTSDLLL DFSSVVADTQ 60 AQFLPKEGID NFRTGTTDNH QIIKPFGDPF VTITDPLLQE LNLAANSGYF SVAGDNNNSE 120 NNNSNNNNGF RIIPKVFEED RIKSQCSIFP RIRISQSNMI QDVATCNSPV IAAHGTSSAG 180 VASPWGIINV VENTNSPRNC VLIDNNNNNT SSSSQIQISS SPRNLGIKRR KSQAKKVVCI 240 PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRND 300 PNMLVITYTS EHNHPWPTQR NALAGSTRSS NPNNSSKPLT ASTVSTASNA QNNNKEVDEP 360 NKTHLPNAVK EEEGIENMEF DLEDHEQNIQ DKDDEQLPPY RPESSFNHNQ EDFFADLDEL 420 EGDSLTMLLT QGFTGGTSND LEDKTTTLPD VFSDFFDDDT SSKSL

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDNFQGDLTD VVRGLGSGHV SSSPGPPEGP SPTTLSPPPP PQSTTSDLLL DFSSVVADTQ  60
AQFLPKEGID NFRTGTTDNH QIIKPFGDPF VTITDPLLQE LNLAANSGYF SVAGDNNNSE  120
NNNSNNNNGF RIIPKVFEED RIKSQCSIFP RIRISQSNMI QDVATCNSPV IAAHGTSSAG  180
VASPWGIINV VENTNSPRNC VLIDNNNNNT SSSSQIQISS SPRNLGIKRR KSQAKKVVCI  240
PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRND  300
PNMLVITYTS EHNHPWPTQR NALAGSTRSS NPNNSSKPLT ASTVSTASNA QNNNKEVDEP  360
NKTHLPNAVK EEEGIENMEF DLEDHEQNIQ DKDDEQLPPY RPESSFNHNQ EDFFADLDEL  420
EGDSLTMLLT QGFTGGTSND LEDKTTTLPD VFSDFFDDDT SSKSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	231	318	2	80	Disease resistance protein RRS1
5w3x_D	4e-25	231	318	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA18G00140

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504968.1	1e-166	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	1e-159	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A384KE50	1e-157	A0A384KE50_ARATH; WRKY35
TrEMBL	Q058H9	1e-157	Q058H9_ARATH; At2g34830
STRING	Bostr.23794s0620.1.p	1e-170	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-139	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]