PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA18G00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32194.4 Da PI: 5.1557 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.3 | 1.1e-19 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ +qvtfskRr g++KKA+ELS+LC+aev +++fs+ +k y + AA18G00100 12 QETNAKQVTFSKRRVGLFKKASELSTLCNAEVGIVVFSPGDKPYSF 57 566779*********************************9988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.922 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-25 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-22 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRRKIKIEK VQETNAKQVT FSKRRVGLFK KASELSTLCN AEVGIVVFSP GDKPYSFGKP 60 SFDVVAEKFT KGNEESEESD EESRDKIELE KMHSRLNSIM DTTEVEKKRG EYLQKLFESC 120 GDKRFMKSDE DLSLDELKIL KTKLESVLDG IEGGKPFSYG KPSLDSVAER YMKEYDESED 180 EGNNCKRPRL KKISGQLNLL NQEIDSERKR SDMLQEQLES AGDEKFLKPI EEFSLKELKE 240 YRVKLQKRQS KIQGQASEMQ ASATLMLISN FKAPENEDLD A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 1 | 77 | 1 | 77 | MEF2C |
5f28_B | 4e-16 | 1 | 77 | 1 | 77 | MEF2C |
5f28_C | 4e-16 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 4e-16 | 1 | 77 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA18G00100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407920.1 | 2e-56 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 2e-49 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | V4MA98 | 6e-55 | V4MA98_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407920.1 | 9e-56 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-48 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
---|---|---|---|
|