PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA17G00081
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 319aa    MW: 36948.3 Da    PI: 5.0434
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA17G00081genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35221142103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ +          weF+++ F +g+k+ll++ik
    AA17G00081  22 FLTKTYDLVEDSRTNHVVSWSKANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDL---------WEFANEGFLRGQKHLLKTIK 109
                   9***************************************************************9987.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    AA17G00081 110 RRKTS 114
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.1E-3517111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEASLSSPQP LEGLNESGPP PFLTKTYDLV EDSRTNHVVS WSKANNSFIV WDPQAFSMTL  60
LPRFFKHNNF SSFVRQLNTY GFRKVNPDLW EFANEGFLRG QKHLLKTIKR RKTSNNTQIQ  120
PQSSTQQSLD CCVEVGRYGL DGEMDSLKRD KQVLMMELVK LRQQQQSTKM YLSLVEEKLK  180
KTESKQQQMM SFLARAMQNP DFLQQLAEQK EKRKEIEEAI TKKRQRTLDQ GPSNVVNVED  240
YDHEEVFTYG DMCDQFEMSE LDRLAMHIQG LGDHSSKQDH QDQGFWEGLL SEDHQNFDGD  300
EENVDVLVEQ LGYLGSSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-241711412123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA17G00081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466576.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-171HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K11e-178R0G5K1_9BRAS; Uncharacterized protein
STRINGXP_010466576.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-168heat shock transcription factor A6B