PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA16G00118

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 338aa MW: 37806.9 Da PI: 10.327

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA16G00118	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.3	1.5e-06	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H AA16G00118 14 FICEICNKGFKRDQNLQLHRRGH 36 89*******************88 PP
2	zf-C2H2	11.9	0.0007	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + s+ k H + + AA16G00118 91 WKCEKCSKKYAVMSDWKAHTKIC 113 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.1E-8	13	36	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-6	13	36	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.011	14	36	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.866	14	36	IPR007087	Zinc finger, C2H2
Pfam	PF12171	1.2E-5	14	36	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	56	86	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.8E-4	79	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.1E-8	86	111	No hit	No description
SMART	SM00355	170	91	111	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MALSPNSLMA TNRFICEICN KGFKRDQNLQ LHRRGHNLPW KLKQKSNKDQ IKKKVYICPE 60 KSCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVMSDWKAHT KICGTKEYRC 120 DCGTLFSRKD SFITHRAFCD ALAEESARFI STPSVATLDA SSNFNININH GNINPNNTIS 180 SLGQNLWNTQ KQPSSQQWLL NENTIKNNNN TFKIFKNQDL DYGLGTLASM SATALLQKAA 240 QMGSKRLSNS NSINGSSSFG LMSSSIFKNM NPNFKNLNKQ KDLTSSGSDE GGFTRDFLGV 300 GSSQELEQSR WPLMVNVNGL PKWSPATVSG TRATDIAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	87	151	3	67	Zinc finger protein JACKDAW
5b3h_F	6e-35	87	151	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA16G00118

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150182.1	1e-139	PREDICTED: protein indeterminate-domain 9-like isoform X2
Swissprot	Q944L3	1e-133	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	M4EYE8	1e-138	M4EYE8_BRARP; Uncharacterized protein
STRING	Bra033840.1-P	1e-139	(Brassica rapa)
STRING	XP_010503173.1	1e-139	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	9e-99	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]