PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA16G00066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27802.2 Da PI: 9.1239 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl AA16G00066 11 KGPWTEQEDTLLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ AA16G00066 64 RGKMTSQEEALVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 109 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.644 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-29 | 10 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-17 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-21 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.49E-12 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 26.759 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 64 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-11 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMKRVGEENR KGPWTEQEDT LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP 60 GLKRGKMTSQ EEALVLELHA KWGNRWSKIA RKLPGRTDNE IKNYWRTHMR KKAQEKKKPE 120 SPTSSLSNCC SSSVSIANTS GNESFYDTGG SAGKINQEIK DGYSMDDIWK EIDHSASNII 180 TPVRDFYLEQ SFPPLDSPSW ESSLDSIWNT DAGKSKMMYS SFAIDQFPFC FKHGTSPWSS 240 DAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-28 | 11 | 113 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-27 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-28 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-28 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA16G00066 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503226.1 | 1e-127 | PREDICTED: transcription factor MYB48-like isoform X2 | ||||
Swissprot | Q9LX82 | 1e-124 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | D7LMV9 | 1e-124 | D7LMV9_ARALL; Uncharacterized protein | ||||
STRING | XP_010503226.1 | 1e-126 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-123 | myb domain protein 48 |
Publications ? help Back to Top | |||
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