PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA16G00036
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 596aa    MW: 67700.4 Da    PI: 5.2886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA16G00036genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.18.9e-1222225921374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +++lL++cA+av+s d+++a + L +++ ++s++gd  qRl  yf+eAL+ar+++   ++   + + ++s++++++ l+a+k f++++P++ +s+++aN
  AA16G00036 222 MRNLLMQCAQAVASFDQKRAAEKLIEIRAHSSKNGDGSQRLGYYFAEALEARITG---TMTTPI-SATSSRTSMVDILKAFKGFVKACPTFIMSYFAAN 316
                 579****************************************************...333223.333334569************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I e +++++++HiiDf+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   ++++eetg+rL++f+++++vpfe+++ +ak++e+++l+eL +
  AA16G00036 317 KTIFELASKATTLHIIDFGILYGFQWPCLIQALSNRPGGPPKLRVTGIELPQPGfrPSQRVEETGRRLKRFCDKFKVPFEYSF-IAKKWETISLDELVI 414
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE+++Vn++l+l+++ de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf eal ++s+lfd++e++  +e++ r++vErel+ r++ 
  AA16G00036 415 NKGETTVVNCILRLQYTADETVSLNSPRDTALKLFRDINPDLFVFAEVNGMYNSPFFLTRFREALFHFSSLFDMFETTTEEENDCRTNVERELIVRDAI 513
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +v+acegaer++r e++++W+ r+ +aGF+p +l+++++k+ak ++rk + + + + ++++++++gWk+r L+++S+W+
  AA16G00036 514 SVIACEGAERFARPESYKQWQVRILRAGFRPEKLDKQIMKEAKEIVRKNYHRDFVIGNDNHWMFQGWKGRVLYALSCWK 592
                 **************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.29196572IPR005202Transcription factor GRAS
PfamPF035143.1E-119222592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDALLQVSVD GFRFDNASGS CCKPMNSLDS GTNRFSCSTE SESQNLSSTD DSSTVCSDYH  60
PFFKYINDML MEEDLEGRSC MLEDSLALQA AERSFFDVLH DQSPPSNDPD DGSITSFLHQ  120
PTSDITGSPA EDSALVSYGE SARRYRFRDD EEDELEDGRR CKLPAISAHE MEELAEKFEE  180
VLLVCKGKDS EETITNQSPP NRSGRGKSLN RSKQQNSEPV DMRNLLMQCA QAVASFDQKR  240
AAEKLIEIRA HSSKNGDGSQ RLGYYFAEAL EARITGTMTT PISATSSRTS MVDILKAFKG  300
FVKACPTFIM SYFAANKTIF ELASKATTLH IIDFGILYGF QWPCLIQALS NRPGGPPKLR  360
VTGIELPQPG FRPSQRVEET GRRLKRFCDK FKVPFEYSFI AKKWETISLD ELVINKGETT  420
VVNCILRLQY TADETVSLNS PRDTALKLFR DINPDLFVFA EVNGMYNSPF FLTRFREALF  480
HFSSLFDMFE TTTEEENDCR TNVERELIVR DAISVIACEG AERFARPESY KQWQVRILRA  540
GFRPEKLDKQ IMKEAKEIVR KNYHRDFVIG NDNHWMFQGW KGRVLYALSC WKPAQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-482115938380Protein SCARECROW
5b3h_A2e-482115937379Protein SCARECROW
5b3h_D2e-482115937379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA16G00036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418880.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLE4MW140.0E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBLV4MXT70.0V4MXT7_EUTSA; Uncharacterized protein
STRINGXP_006418880.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]