PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00308
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 379aa    MW: 42302.6 Da    PI: 5.9119
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.64.9e-32218272155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+rWtpeLHe+F+eav++L G+ekAtPk++++lm+v+gLt+++vkSHLQkYRl
  AA15G00308 218 KPRMRWTPELHESFLEAVKKLQGPEKATPKAVMKLMNVEGLTIYQVKSHLQKYRL 272
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.023215275IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-30216273IPR009057Homeodomain-like
SuperFamilySSF466892.06E-18217272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24218273IPR006447Myb domain, plants
PfamPF002494.0E-10220271IPR001005SANT/Myb domain
PfamPF143797.3E-22289335IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKSRSLVSVA TDGDIAGLPQ VSSPLVSPVY NFLNIQPETL KVPFLRPDAQ DSLNSRSSNG  60
TFSRSSAFCN LSSSSSSETQ KHLGNTLPFL PNPFTCSSAM ESERSAARFS EDLSNPFDGG  120
FLTLSGDACS DGGFHDLDCP NDNFSYSEQM ELQFLSDELE LAITDSAETP RLDEIYETPL  180
PFSNSMTGLS PGQNSVPPSM SISAVSSHNC PGSAVNNKPR MRWTPELHES FLEAVKKLQG  240
PEKATPKAVM KLMNVEGLTI YQVKSHLQKY RLAKYMPERK EAFVMNRAMQ ITEALRMQME  300
VQKQLHEQLE TQRSLQLRIA EHGRYLEKII EEQRKAGTFI ISSTNSKKET QIESKTDTKH  360
KAFEVKEDEC ETPPKRSRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24218275259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA15G00308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886314.11e-157myb family transcription factor PHL6
SwissprotQ949U21e-150PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M91e-155D7L0M9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1373__AT3G13040.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-139G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]