PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA15G00270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 20541.2 Da PI: 9.8297 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.1e-31 | 25 | 82 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkg++++rsYY+Ct+ gC+vkk+ver a++ k +++tYeg+H+he AA15G00270 25 DDGYRWRKYGQKVVKGNPNARSYYKCTTLGCSVKKHVERGADNIKNIVTTYEGRHTHE 82 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 9 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.33 | 19 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 19 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-34 | 24 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 25 | 82 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MIGATRTSKQ QRIIIQMEDE NDNPDDGYRW RKYGQKVVKG NPNARSYYKC TTLGCSVKKH 60 VERGADNIKN IVTTYEGRHT HEPPPPRNIT NSGLTNRSPG SLTGRIRRLS KPSSSASLDI 120 TMPCSTSLGF HQHYDVTMMY MKGLSKLQSL SAHLNPVYTS YRNDVPVPMP SQNVPNEEEL 180 RC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 15 | 84 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 15 | 84 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA15G00270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096699.1 | 9e-52 | PREDICTED: probable WRKY transcription factor 10 | ||||
Swissprot | Q9LG05 | 9e-43 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | Q9ARF4 | 1e-50 | Q9ARF4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.6758s0015.1.p | 4e-52 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55600.1 | 4e-45 | WRKY DNA-binding protein 10 |