PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA15G00268

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRAS

Protein Properties

Length: 429aa MW: 48079.2 Da PI: 6.5092

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA15G00268	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	388.3	8.5e-119	41	429	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal...........k 82 l++lL+++Ae +s+++ ++aq+lL+ ls+++sp+gd+++Rl+ ft+ L+++ ++ +++ ++ ++++t+++ + AA15G00268 41 LRRLLFTAAELISQSNISAAQNLLSLLSTNSSPYGDSTERLINLFTKSLSSQHIKQDPTVENTSATWTTNSTVftsslcK------EhflfqsndndsC 133 689**************************************************9999999999999986665544430......2333444444441 PP GRAS 83 l..fsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168 + +++++P+++fshltaNqaIl+a+e++ ++Hi+D+di+qGlQWp+L+qaL +R+ + +pslRiTg+g+ + ++l++tg+rL++f AA15G00268 134 YlwLNQLTPFIRFSHLTANQAILDATETNgngngtnGTLHILDLDITQGLQWPPLMQALIERSsnhiNHKPSLRITGCGQ----DLNRLNRTGDRLTRF 228 156********************998888888899********************777777*******....9********** PP GRAS 169 Aeelgvpfefnvl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 A++lg++f+f++l +++++ + l++L++ pgE+laVn+v+ lh+l+ +d +L ++k+l+P++v+v+e+e++ ++ +Fl+rf+ a+++y+ AA15G00268 229 ASSLGLQFQFHTLliNEEDITGVLLSSLSIIPGETLAVNCVHFLHKLH--------DQDLFLTAIKDLNPRIVTVAEREVNFEDFTFLNRFVAAVDHYT 319 ********954444899999*******************9........4689*********************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 a+fdslea+lp++s+er +E++++grei +v+a e aerr rh+++e+W+ +++ GF +vp++++a +qaklllr ++ s+gy++e ++sl+lgW+ AA15G00268 320 AIFDSLEATLPPNSRERLILEQRWFGREILDVLAVEAAERRLRHRRFENWEVLMKRLGFVNVPIGSFALSQAKLLLRLHYpSEGYNLEYLNNSLFLGWQ 418 *********************************************************************************************** PP GRAS 364 drpLvsvSaWr 374 +r L+svS+W+ AA15G00268 419 SRLLFSVSSWQ 429 ********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.369	15	408	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-116	41	429	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MLNKSSSSSS SSEDTSTAVA VAGPTVPPPL CSTSSSTGHN LRRLLFTAAE LISQSNISAA 60 QNLLSLLSTN SSPYGDSTER LINLFTKSLS SQHIKQDPTV ENTSATWTTN STVFTSSLCK 120 EHFLFQSNDN DSCYLWLNQL TPFIRFSHLT ANQAILDATE TNGNGNGTNG TLHILDLDIT 180 QGLQWPPLMQ ALIERSSNHI NHKPSLRITG CGQDLNRLNR TGDRLTRFAS SLGLQFQFHT 240 LLINEEDITG VLLSSLSIIP GETLAVNCVH FLHKLHDQDL FLTAIKDLNP RIVTVAEREV 300 NFEDFTFLNR FVAAVDHYTA IFDSLEATLP PNSRERLILE QRWFGREILD VLAVEAAERR 360 LRHRRFENWE VLMKRLGFVN VPIGSFALSQ AKLLLRLHYP SEGYNLEYLN NSLFLGWQSR 420 LLFSVSSWQ

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MLNKSSSSSS SSEDTSTAVA VAGPTVPPPL CSTSSSTGHN LRRLLFTAAE LISQSNISAA  60
QNLLSLLSTN SSPYGDSTER LINLFTKSLS SQHIKQDPTV ENTSATWTTN STVFTSSLCK  120
EHFLFQSNDN DSCYLWLNQL TPFIRFSHLT ANQAILDATE TNGNGNGTNG TLHILDLDIT  180
QGLQWPPLMQ ALIERSSNHI NHKPSLRITG CGQDLNRLNR TGDRLTRFAS SLGLQFQFHT  240
LLINEEDITG VLLSSLSIIP GETLAVNCVH FLHKLHDQDL FLTAIKDLNP RIVTVAEREV  300
NFEDFTFLNR FVAAVDHYTA IFDSLEATLP PNSRERLILE QRWFGREILD VLAVEAAERR  360
LRHRRFENWE VLMKRLGFVN VPIGSFALSQ AKLLLRLHYP SEGYNLEYLN NSLFLGWQSR  420
LLFSVSSWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-58	49	428	27	378	Protein SCARECROW
5b3h_A	3e-58	49	428	26	377	Protein SCARECROW
5b3h_D	3e-58	49	428	26	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA15G00268

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392620.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	0.0	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	V4MF51	0.0	V4MF51_EUTSA; Uncharacterized protein
STRING	XP_006392620.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	0.0	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]