PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA152G00005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18324.3 Da PI: 6.545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.2e-20 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W++eIrdp + r++lg+f+tae Aa+a++ a+++++g AA152G00005 41 RYRGVRQRP-WGKWASEIRDP-----HkaVRVWLGTFDTAEAAARAYDSAALSFRG 90 8********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-25 | 40 | 100 | No hit | No description |
PROSITE profile | PS51032 | 25.119 | 41 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-39 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 41 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 41 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-33 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-12 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-12 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSTMVSALTQ VLSSSSQPNP SHSSVAIEST SKAIPGEKRK RYRGVRQRPW GKWASEIRDP 60 HKAVRVWLGT FDTAEAAARA YDSAALSFRG SKAKLNFPEV VNTLPPPRPT SADDQMDYWS 120 YSQLLQSSDQ LEQEEGENTK TLEEPAKEQT LSTPSSFDFS VPSSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-25 | 38 | 103 | 2 | 68 | ATERF1 |
3gcc_A | 8e-25 | 38 | 103 | 2 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA152G00005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021737732.1 | 2e-38 | ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q70II3 | 4e-38 | EF110_ARATH; Ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | V4S182 | 2e-36 | V4S182_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4SAQ3 | 1e-36 | V4SAQ3_9ROSI; Uncharacterized protein | ||||
STRING | Bostr.15774s0146.1.p | 4e-38 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-30 | ethylene response factor 110 |