PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA14G00044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 173aa MW: 20378.2 Da PI: 8.3844 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69 | 7.9e-22 | 1 | 42 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +Gg+a+DGCgEfmp+ gee++++al C+AC+CHRnFHR+e + AA14G00044 1 MGGNALDGCGEFMPN-GEENSIEALICSACNCHRNFHRKEIIQ 42 7*************8.9999*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 19.774 | 1 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.9E-19 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.7E-22 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.02E-16 | 91 | 155 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 92 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-25 | 97 | 153 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGGNALDGCG EFMPNGEENS IEALICSACN CHRNFHRKEI IQKQNLIHKI KPQQMIMPIG 60 VSNYNYIHNL DQSNDLIEET ALNAASKPLQ TFSYNQKKRF RTKFSQEQKE KMLRFAEKIE 120 WKLQREEDCV VQRFCEEIGV KRKVLKVWMH NNKHNHFSKN MNNINLEDDH TIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 7e-23 | 97 | 155 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA14G00044 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172896.1 | 3e-78 | homeobox protein 31 | ||||
Refseq | NP_973826.1 | 3e-78 | homeobox protein 31 | ||||
Refseq | XP_006305389.1 | 3e-78 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_006305390.1 | 3e-78 | zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 2e-79 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A178W768 | 6e-77 | A0A178W768_ARATH; ZHD4 | ||||
TrEMBL | R0IMH2 | 7e-77 | R0IMH2_9BRAS; Uncharacterized protein | ||||
STRING | AT1G14440.1 | 1e-77 | (Arabidopsis thaliana) | ||||
STRING | XP_006305389.1 | 1e-77 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-81 | homeobox protein 31 |