PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA14G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 408aa    MW: 45189 Da    PI: 8.4393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA14G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33143199259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers  d++v+ei+Y+g+Hnhe
  AA14G00003 143 DDCYNWRKYGQKQVKGSEFPRSYYKCTHQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 199
                 79***************************************.***************8 PP
2WRKY106.71.2e-33306364159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  AA14G00003 306 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAASDPKAVVTTYEGKHNHD 364
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29136201IPR003657WRKY domain
SuperFamilySSF1182902.22E-25141201IPR003657WRKY domain
SMARTSM007741.4E-35142200IPR003657WRKY domain
PfamPF031063.6E-25143199IPR003657WRKY domain
PROSITE profilePS5081124.375143201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-37291366IPR003657WRKY domain
SuperFamilySSF1182908.5E-30298366IPR003657WRKY domain
PROSITE profilePS5081138.01301366IPR003657WRKY domain
SMARTSM007741.9E-39306365IPR003657WRKY domain
PfamPF031064.1E-26307364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTSPATATAT GSGYQRVSEG DGEIDPRFKQ SRPTGLMISQ SPAMFTVPPG ISPAMLMDSP  60
SFMSLFSPVQ GSYGMTHQQA LAQVTAQANN ANSQPEPSIQ SISSSKPQIQ TSIQDSSSIQ  120
RENSDVTIFE HRSQPQNVDK PGDDCYNWRK YGQKQVKGSE FPRSYYKCTH QGCPVKKKVE  180
RSLDGQVTEI IYKGQHNHEP PLNTKRGSSK DFANLTGNSM NFRGNSESKT KREQEVSQAT  240
TTEQNSEASD GEEVGNGEIN VIEKDEDEPD PKRRSTEVRV PEPVASHRTV TEPRIIVQTT  300
SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTTPGCGVR KHVERAASDP KAVVTTYEGK  360
HNHDLPTAKS SSHATAAAAQ LRQESRHGLT NMNQQPVARL RLKEEQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-45143366877Probable WRKY transcription factor 4
2lex_A1e-45143366877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA14G00003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890032.10.0probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLD7KBF40.0D7KBF4_ARALL; WRKY DNA-binding protein 4
STRINGfgenesh2_kg.1__1511__AT1G13960.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]