PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA13G00092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 26187.9 Da PI: 8.5567 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.7 | 4.2e-29 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p + p++q ++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Ga+g+++++++ ++q+++++ AA13G00092 2 SCNGCRVLRKGCSENCILRPSIqwiqtPEAQGYATVFVAKFFGRAGLMSFISDVPESQAPALFQSLLYEACGRTINPVNGAIGLLWTGNWSICQAAVQT 100 6*************************99******************************************************************99886 PP DUF260 95 a 95 AA13G00092 101 I 101 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.07 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PSIQWIQTPE AQGYATVFVA KFFGRAGLMS FISDVPESQA 60 PALFQSLLYE ACGRTINPVN GAIGLLWTGN WSICQAAVQT ILRGGSLKPI PEIGGFAGFP 120 SILRGGSSEI CNEMLYLRRN DSDDRKIYHH CRFSNSRSRS RSSPPKRKRL AEQQHLSELN 180 LSQIPNFRIK TMSLDKDTCR PETPSIYSDE SVTVSPVKIS GDCYDGEDAK LLNLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA13G00092 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291765.1 | 1e-116 | LOB domain-containing protein 38 isoform X1 | ||||
Refseq | XP_023638239.1 | 1e-116 | LOB domain-containing protein 38 isoform X2 | ||||
Swissprot | Q9SN23 | 1e-108 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1J3EEH7 | 1e-116 | A0A1J3EEH7_NOCCA; LOB domain-containing protein 38 | ||||
STRING | Cagra.4491s0014.1.p | 1e-115 | (Capsella grandiflora) | ||||
STRING | XP_006291765.1 | 1e-115 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-104 | LOB domain-containing protein 38 |