PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA131G00004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | CPP | ||||||||
Protein Properties | Length: 219aa MW: 24532.4 Da PI: 8.1495 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 31.7 | 3e-10 | 83 | 108 | 15 | 40 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNke 40 k YC+Cfaa+++C+e+C+C dC+Nk AA131G00004 83 KSYCDCFAAEAYCGETCSCIDCFNKP 108 99**********************96 PP | |||||||
2 | TCR | 45.6 | 1.4e-14 | 177 | 214 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k CnC+ks+ClkkYCeC++ g+ Cs CkC++CkN+ AA131G00004 177 KGACNCRKSNCLKKYCECYKGGVGCSLYCKCQGCKNTF 214 568*********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 27.468 | 75 | 215 | IPR005172 | CRC domain |
SMART | SM01114 | 0.0013 | 83 | 110 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.1E-7 | 83 | 107 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-10 | 175 | 216 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.5E-11 | 179 | 213 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEMDLLQIIP KYSPDPSSFA KLVIDVEEKK LLKTFRRKKA STMEMDLLQI IPPKYSSTSS 60 FAKLVIDVEL SLLPHAPQED LDKSYCDCFA AEAYCGETCS CIDCFNKPVH EDVLMASRKQ 120 IESRNPFAFS PKLIKSLDSV PETETGTEVY KDSSSPLIKL INNAMDKTKT RASTRYKGAC 180 NCRKSNCLKK YCECYKGGVG CSLYCKCQGC KNTFGTRDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA131G00004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001328549.1 | 3e-50 | TESMIN/TSO1-like CXC 2 | ||||
Refseq | NP_193213.5 | 3e-50 | TESMIN/TSO1-like CXC 2 | ||||
Swissprot | F4JIF5 | 3e-51 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | D7MBC7 | 2e-49 | D7MBC7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__2853__AT4G14770.1 | 4e-50 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15696 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-53 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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