PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1304G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 354aa    MW: 39190 Da    PI: 8.9602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1304G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32212267156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k+r++W+peLH+rF++a++qLGGs++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  AA1304G00001 212 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIREHMKVDGLTNDEVKSHLQKYRLH 267
                   79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.068209269IPR017930Myb domain
SuperFamilySSF466894.48E-18210270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28210270IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-27212267IPR006447Myb domain, plants
PfamPF002493.0E-8214265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMLDNVGKDY AQKMQRCNEY VEALEVEQKK IQVFQRELPL CLELVTKAIE TCRRELSGSS  60
TSEHAQGQSD CSEQTTSVCA GPVFEEFIPM KRSSLCEEEG EHESHKPEKI EKISGKKSDW  120
LRSVQLWNPS PDSQPKEDRV AKKTKVVEVK PNTGAFQPFQ KENRAPEINL QLLKATCSAP  180
TTSSTTETGG AKSDTDKAEG EQRGHQSLSR RKQRRCWSPE LHRRFLHALQ QLGGSHVATP  240
KQIREHMKVD GLTNDEVKSH LQKYRLHTRR PATSGAAHGS RSPQQPQFVV VGGIWVPSPP  300
AEAAKNSVYA PVAALPSTRS SESPKQSAER SSGRCNSPAA SSSTNTTIIS SHVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1304G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551302.11e-150PREDICTED: myb family transcription factor EFM
SwissprotQ8VZS31e-139HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A087HGN91e-140A0A087HGN9_ARAAL; Uncharacterized protein
STRINGXP_010551302.11e-149(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-134G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]