PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00221
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 309aa    MW: 33655.4 Da    PI: 7.6016
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00221genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.8e-3098151155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  AA12G00221  98 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 151
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.96E-2095155IPR009057Homeodomain-like
PROSITE profilePS5129411.05995154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-3097156IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-2499151IPR006447Myb domain, plants
PfamPF002491.2E-7101150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MREEDTNWFA KWQEELPSPE ELIPLSQSLI SPDLALAFDI RNPNNGNTNS IQVLPQSTPP  60
TQLLPSSQAN SSADFASDSA DLGSGGVAGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI  120
KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGLA SGNGGGNGSD PVTDHLFASS  180
PVPPHFLHPN RGSNSDHFIS SFVPITTLQQ QQQQHMAVSA SNPHLQPPQF HHRQISASHF  240
NGQFGSQTNG KVVDHSFLAR QTHQVAQRIS ATSSLHSPVS NYAENLMSAD TTTGGGGRTV  300
LTLFPTRND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-3298154157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00221
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298091.11e-136transcription factor MYBC1
SwissprotO222105e-65MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HMQ61e-135R0HMQ6_9BRAS; Uncharacterized protein
STRINGXP_006298091.11e-135(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-99G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]